YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4462-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.96
Transmembrane Helix	58	79	0.88
Non-Cytoplasmic	80	151	0.93
Transmembrane Helix	152	172	0.83
Cytoplasmic	173	178	0.80
Transmembrane Helix	179	197	0.94
Non-Cytoplasmic	198	204	0.75
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	236	0.77
Transmembrane Helix	237	256	0.92
Non-Cytoplasmic	257	261	0.83
Transmembrane Helix	262	283	0.92
Cytoplasmic	284	356	0.99
Transmembrane Helix	357	378	0.92
Non-Cytoplasmic	379	385	0.86
Transmembrane Helix	386	409	0.87
Cytoplasmic	410	417	0.85
Transmembrane Helix	418	437	0.95
Non-Cytoplasmic	438	449	0.86
Transmembrane Helix	450	472	0.83
Cytoplasmic	473	483	0.81
Transmembrane Helix	484	503	0.89
Non-Cytoplasmic	504	513	0.65
Transmembrane Helix	514	534	0.91
Cytoplasmic	535	573	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNPSPARGG ESTAPHILPN EMENDVDKRI ATPPPAPAGS DVIADVVGDF GIWQLRTILI  60
   61 IFLCKIPAAW FMACIIFTGP ELYPGSEFTC DTSYLTSSSN SSFSISDNQC YVLDESTGTS 120
  121 SECEQFNYVS SFDSLIMQFN LVCLRDIFVA WTQYWHLFGV LVGGVMGTKM MLGISPRSTY 180
  181 CVGAVAQILC GVVTGYARDF SLHCAFRCLS AVCCAIMFTA GQAIFADITA GMHRIGAIIL 240
  241 YDTFWSIGVI LLPGLSSFFN SWSLIYVGIT FPTIMLILLL YWTPDSPRWL LRHAADRFSI 300
  301 DNVEQILREG AAINDRSFKI PPDFRQQLEQ LSERLKAQPP PAPWTELWKG KRAKTHMVAA 360
  361 HLALAFFVIN FMGMLLNIRS FGRDYLVPNT IAMGFSEIIG CFLALHFTLK HNKWKWQCAG 420
  421 VFNILAGILG CMGWIFTNAD SMDADLKVSL WMIIATIPKA AVSCAQSMIL ACMNELMPAN 480
  481 KKQLFVFSVV TWARVWLLSA PFFNVLRKID TAMSLTSYCV FSILGGICTS LLLTPRLSVS 540
  541 PVVPHLEQRN TKEQSPLNAP VWTVESDVNN TRL