YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311938, CG6...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.93
Transmembrane Helix	70	94	0.84
Non-Cytoplasmic	95	101	0.75
Transmembrane Helix	102	132	0.71
Cytoplasmic	133	143	0.70
Transmembrane Helix	144	167	0.89
Non-Cytoplasmic	168	214	0.54
Transmembrane Helix	215	235	0.69
Cytoplasmic	236	252	0.79
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	321	0.72
Transmembrane Helix	322	345	0.82
Cytoplasmic	346	356	0.69
Transmembrane Helix	357	379	0.85
Non-Cytoplasmic	380	392	0.56
Transmembrane Helix	393	413	0.89
Cytoplasmic	414	418	0.55
Transmembrane Helix	419	438	0.89
Non-Cytoplasmic	439	451	0.59
Transmembrane Helix	452	481	0.83
Cytoplasmic	482	611	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVKKLSFD AGCEEKEKYT AQNGDDYYGQ AHTVDLDVAS KYSKPKEAHW LVRRIFFLSW  60
   61 ITSYDREQAF ADLIAGITLG LTIIPQSIAY AALAGLSSEY GLYSAFIGSI IYVFFGTIPQ 120
  121 VSIGPTSLMA ILTLQFCADK PVQVVIVLAF LAGLVELAMG VFQLGFIVSF IPAPVTKAFT 180
  181 SGTALIVVFA QIKNLLGVRI KGFPSIGDFF TNIRPTDAAM GISCMVVLLS LRLLSQVNFK 240
  241 QDTPVTRRLK KILWYISISR NALVVFFTGL LVFIWVKKSS IEAVPFALSS KVSSAMPTIK 300
  301 LPPFAFEYQN RTYVFTDILH ELGSGIVVVP IVAVLANVAI AKAFVKDGNL DASQEMLTLG 360
  361 LCNIAGSFFS AMPTCGAFTR SAVSQASGVR TPMAGIYTGL IVLSALSILT PYFQYIPKAS 420
  421 LSAVLIAAVI FMIDLAPVKE LWQTNKKDFF SWVGSFIICL VAGVELGLLF GIVLSMVFIL 480
  481 LRLGNPKFEV TLKQHESTYY VHIVPQSDVY YTGVDALRSE LRGACRLYHN DFPVVLDCAR 540
  541 FMQFDATFSE MLISVAKEMA SHDVLLILQN MSLKVQQMLP VMGNVRFCQE DSQLSSHLQV 600
  601 EKEAPVVEAK L