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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7299468, gi|2...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSMKADELP ENPRERSSPL SSLMFCFALP VLFKGRKKTL EQKDLYRALK EHKSAWDEQV  60
   61 AKNETPRLGR ALTKVFGFHL FITGVFLLAQ EFLTKVTQPI CLIGVMAYFA GNDPDRSKAQ 120
  121 LWAAGLIAGS VFSVCIGHPY MLGLLHLGMK MRIALSSLIY RKALRLSRTA LGDTTVGQVV 180
  181 NLLSNDVGRF DLVLINVHYL WIAPLELIAV TYLMYLEIGI SSMFGVAIML LFLPFQSYLG 240
  241 KRTSVLRLRT ALRTDERVRM MNEIISGIQV IKMYAWEKPF GKVVEMTRFN EMLCIKQVNY 300
  301 IRGILISFAM FLSRIFTSSS LIAFVLLGNI LNAEKAFFVT AYYNILRRSV TMFFPQGISE 360
  361 FAELLVSVRR LEAFMHRPET KVRDKSKVKN ANQKAESPNG DSPKGNGIPE NLIEFSQFQA 420
  421 RWESHSLEPT LEDINLQLGR RKLVAVIGPV GAGKSSLIQA ILGELPGESG TLRINGSYSY 480
  481 AAQEPWLFTG TVRQNILFGL DWDKHRYRTV VKKCALERDF ELLPFGDKTI VGERGASLSG 540
  541 GQKARISLAR AVYRRADIYL LDDPLSAVDT HVGRHLFDQC MRGYLRSELV ILVTHQLQFL 600
  601 EQADLIVIMD KGRISAMGTY SSMKRSGLDF AQLLTAPNKD AEDLDEIDGA GGDGLDLLNV 660
  661 PSLSRRGSKN SKPSTRNNSF TSLSSMAESM AQEASLQMQE TRVEGKIGLG LYKEYLTSGS 720
  721 SWFMIFFMVF LCLATQILCS AADYFLSYWV DKNVDGQTDI NTDPQDMYYF AALNVAVVVF 780
  781 TIVRTMLFYK MAMRSSTQLH NAMYQGITRA AMYFFNTNPS GRILNRFSKD LGQLDEVLPS 840
  841 VMLDVVQLFL TLLGIIVVIC ITNPYYLILT LALAIIFYYI REFYLKTSRD VKRLEAVARS 900
  901 PIYSHLSATI TGLPTIRALG AQKELIAEFD NLQDLHSSGY YTFLATNRAF GYYLDCFCTL 960
  961 YIVIIILNYF INPPQSPGEV GLAITQAMGM TGMVQWAMRQ SAELENTMTA VERVVEYDEI1020
 1021 EPEGEFDSRE GKKPSPSWPE KGEIIAEDLC LRYFPDPQAK YVLKALNFRI RPCEKVGIVG1080
 1081 RTGAGKSSLI NALFRLSYNE GIITIDERDT ADMGLFDLRS KISIIPQEPV LFSGSMRYNL1140
 1141 DPFEEYNDAK LWDALEEVKL KPLISELPNG LQSKISEGGS NFSVGQRQLV CLARAILREN1200
 1201 RVLVMDEATA NVDPQTDALI QATIRSKFRD CTVLTIAHRL NTIMDSDRVL VMDAGHLVEF1260
 1261 GSPYELLTSS ESKIFHGMVM ETGQNTFDSL LKVAEKAHLE SMKPKSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle