YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6574-PA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.64
Transmembrane Helix	74	93	0.91
Non-Cytoplasmic	94	99	0.64
Transmembrane Helix	100	119	0.77
Cytoplasmic	120	138	0.68
Transmembrane Helix	139	154	0.75
Non-Cytoplasmic	155	163	0.70
Transmembrane Helix	164	183	0.85
Cytoplasmic	184	243	0.97
Transmembrane Helix	244	265	0.85
Non-Cytoplasmic	266	281	0.83
Transmembrane Helix	282	303	0.90
Cytoplasmic	304	311	0.85
Transmembrane Helix	312	332	0.95
Non-Cytoplasmic	333	339	0.69
Transmembrane Helix	340	359	0.93
Cytoplasmic	360	369	0.84
Transmembrane Helix	370	393	0.91
Non-Cytoplasmic	394	407	0.90
Transmembrane Helix	408	429	0.91
Cytoplasmic	430	444	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEWLKISCL LCVFGCIREI RPSEPYVTEY LLGPWRNITE QQLTHDVYPV GTYSYLVQLV  60
   61 FVFLITDFLR YKPLIITIGA AGVIIWSMLI WTTSLLSLQI LEFFFGTYMA AEVAYYTYIY 120
  121 AKVDKKYYAR VTSHTRAAMF AGKLVSGITS QLMLNLELMN YKELNYITLG TQIIAMLWAF 180
  181 GLPRVDRSLY FHREQLSITE PQTQLPGVGN LAEMDQQQEN TQKQPGALSL LWLHFRNAYT 240
  241 NPRVVQWSLW YAIGLAGYLQ VTYYVQVLWK VIEPEPVIAW NGAVDAVLTA LAALSALAAG 300
  301 YLHTGRLRPR ASLLILGILS AVEGGCVLIC CWTQDIYWSY AGFVLFGALY GFTITVASAE 360
  361 VARNLEEESF GLVFGVNTFV ALIFQSLLTI IFVTDTGFEL DPVGQYTAYA FYFIGVGVLY 420
  421 LISVLIEYLM CRNNDVEKLE NSLD