YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4089-PA
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASVVENAP NQKEVDGKMA TTEESEKPSN SIGLLPIMIF LAATVATAVV VEVLPHASRV  60
   61 FPWKLADSSA DQLQPPPTYA IFGRSPTEEH LVHVVNVLHK FGYKRVGVND SWNLLWAHDY 120
  121 PFLSFANLKN LGQHQVVNHY PGCGYLTNKV DLCTTQLPFL PRAFRLPAER EEFLDYAREN 180
  181 PQALFVQKHN EHRHIKVRAP ADIAFGSNDS FVQEFVQRPY LVDGHKFDIG VYVVITSVNP 240
  241 LRVYIYTGDV LFRYCPVKYH PFDAENVDKY IVGDDYLPTW EVPSLRKYYN RFGGSMRTVF 300
  301 EAYVRDQGKD PAQIWPQVEH IVRTTIAAKE KDIVNILRSY RTHNFFDLMR FDLFIDEDLK 360
  361 VFLMEANMSP NLSSAHFKPN SLLYEQVLYS VFNLVGIRPL TSTSGALLGE SSEMITTDKN 420
  421 LSTDLNKCAA HDCDKSCNKE ECDLCLQCLS GSEYKMLQQA HQEHLHRVDM KRIFPKPIRD 480
  481 PMRFDVMAET ANMSKKNAWM TRWFHNKCQF DAVWCN

Type	Start	End	Confidence
Cytoplasmic	1	31	0.80
Transmembrane Helix	32	51	0.79
Non-Cytoplasmic	52	516	0.96