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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cas-PA
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQMEFIMQ LYMMNLMKQQ QQMQLQLPQQ QQQQQLAGYT YTQNEDISSS TSVQQQQQQQ  60
   61 QEQLQQPQPD LRKTRTHKRI SSQNTNCSSS RSCSPNSNLI AFQPQQYPGA TAATPSTPNS 120
  121 HPSNLVNQML LQSLPPLTQL MLQQQQQQHL LTTSNLLLTP THTPSSLGKQ DPLQHPLLLG 180
  181 QFAGSEQMAT NNFLQSSTVT STPIEREKAA TPAPSAGATA GNLSAAQVKF EQESADDDED 240
  241 DDKPLSSLTS CSSSGHTNAS SEKLLLSGVH PLESTTDSLD SPSMYTPVKQ PADSSYGLIT 300
  301 PVDSDLTPNT PLQPTQTISL LTPPSSEQSK SLVSLSAASG LDALLQNEEV LKNLRKVSSY 360
  361 LECENSLCRQ ENLREHFHCH EEPCQGKILS KKDDIIRHLK WHKKRKESLK LGFARFSSSD 420
  421 DCAPAYGEGC AYNWKQTHYH CVYEHCPKVY VSTSDVQMHA NFHRKDSEIV NEGFRRFRAH 480
  481 ETCRIEDCPF FGKKISHYHC CREGCTHTFK NKADMDKHKT YHLKDHQLKM DGFKKILKTE 540
  541 VCPFDACKFS TVCNHIHCVR EGCDYILHSS SQMISHKRKH DRQDGEQAYQ QFKIKQDVEE 600
  601 SSLDAMPQQQ QQQQQQQPTS LSQSQSSSSV CGGSNTSTPL SSLSAEHFLA RKRGRPPKKI 660
  661 QLPADAQQSE AKRLKVEDES SNPAMLLPQS QPAAAVHPLT SGLFPGLLPA AAAPGVDPTA 720
  721 PNFQLTHLMA LFQLQNPLFY QNLYPGMTQN SSMLGNLAAL SAASAAAAAA AAANGAGVQQ 780
  781 PKAEFSFKPE FKE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle