YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Krn-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAQDLLLLA TALIGAYLPL TAACSSRAIA KPRPTAAPIL PPDNVEISTT PRPNVTFPIF  60
   61 ACPPTYVAWY CLNDGTCFTV KIHNEILYNC ECALGFMGPR CEYKEIDGSY LPTRNRVMLE 120
  121 KASIVSGATL ALLFMAMCCV VLYLRHEKLQ KQKLHDSTTT TTTDGGCQNE GMDEVDGLRP 180
  181 LRPVRRPFGP CRILSLEEAH LQAKASNRPR HCNELLR

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	123	0.97
Transmembrane Helix	124	144	0.86
Cytoplasmic	145	217	0.87