YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0310004, CG4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.93
Transmembrane Helix	58	79	0.80
Non-Cytoplasmic	80	94	0.75
Transmembrane Helix	95	115	0.90
Cytoplasmic	116	123	0.89
Transmembrane Helix	124	146	0.88
Non-Cytoplasmic	147	152	0.61
Transmembrane Helix	153	173	0.89
Cytoplasmic	174	181	0.90
Transmembrane Helix	182	204	0.90
Non-Cytoplasmic	205	210	0.72
Transmembrane Helix	211	230	0.93
Cytoplasmic	231	288	0.96
Transmembrane Helix	289	308	0.91
Non-Cytoplasmic	309	337	0.88
Transmembrane Helix	338	356	0.94
Cytoplasmic	357	364	0.83
Transmembrane Helix	365	384	0.89
Non-Cytoplasmic	385	391	0.68
Transmembrane Helix	392	410	0.80
Cytoplasmic	411	419	0.64
Transmembrane Helix	420	441	0.83
Non-Cytoplasmic	442	451	0.61
Transmembrane Helix	452	471	0.93
Cytoplasmic	472	478	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYLNNEPAA LPSPANLAPR DVHSSTLELK TVSINPDDTY TVQQAINAFG FGWFHVKLSL  60
   61 LVGLCWMSDS MEMAILSILG PSLFCEWNVT KFQQASVTTV VFLGMMLSSS FWTQLSNRYG 120
  121 RKSALTLFGV LLVLYSILSS VAPSYAWLLT LRGLVGFAIG CVPQSVTLYA EFLPTKHKGK 180
  181 CVVLMDCFWA LGACFEVVLA LVVYPYYGWR GLLALSATPL LIFTILSPWL SESARYYSYN 240
  241 GHNDKAIKVL EQIAHNNKRH MLMGRLMADD EPSCAESFRS LLSPSLYRTT ILLWFLWLAS 300
  301 AFCYYGLVLV TTELLVARNK ESHPNECVTF MTSDFMDLLW ITLSEFPGIL LTIKVVKLFG 360
  361 KKKTIVLQYL ALVLCTLVLM SVESRFSTSV TLFIARGTIS GIFQAIYVYT PEIYPAALRS 420
  421 VGVSGCSVLA RLGAMLTPFV AQVLMDSSRI QAMSTYAIVG LLASIACVFL PRETVGYH