YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5398-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWDFFTFIR GATEFSATAL LILLGCMGDS TNQGGESKFL VASVHYGLTV MVVMHVFGFV  60
   61 SGAHSNPCIS ISCYLMGYIA LEVMMMYVVC QMAGAFLGYF LLMQLLPKEL VDKSKPGICL 120
  121 VQPMDTLSTY QVVIIECLLT AVLVLGWCSL WDVRNGRFLD SVAIRMGLLV IACSFAGIQL 180
  181 TGASMNPAKT LVPAIFYGSP NSVLMQLTGQ ILAAIMVPFV WNHAYTPPYK PLEIPVCN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.85
Non-Cytoplasmic	29	41	0.79
Transmembrane Helix	42	63	0.87
Cytoplasmic	64	73	0.74
Transmembrane Helix	74	97	0.83
Non-Cytoplasmic	98	129	0.86
Transmembrane Helix	130	151	0.92
Cytoplasmic	152	161	0.88
Transmembrane Helix	162	183	0.92
Non-Cytoplasmic	184	202	0.88
Transmembrane Helix	203	225	0.85
Cytoplasmic	226	238	0.94