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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21645643, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAISAATPS LRRATAIDGD ADADADADAG ADGNDNENHV DGYSDDDDDD ERWLRAARAQ  60
   61 KVQKAQTQAY AAHNDRPQTK TTVAIRQNNG SNKSNSNSNS KCNSSSSNNN NNYKSATTSQ 120
  121 SNINHRLAPR ASFPEIMQPR LSLNGLLNPS LMPSPRPLYR DHSSRSINPL TAYEQQMAEL 180
  181 DGSFYASNAG YLGAGMGGSA GDGTTCTNLT VGGGSTGGGA MASGGGGTSA QVGGGGGGSG 240
  241 GGGAAIHTTE LSITPTMAGD EQFIDLGSLR RFSIDRQSFL DLGPKFGMTQ PKFGQSVSQQ 300
  301 GFFTSHDSLA TPCASRASNS HMATVSTASE MDLLHNKQRN KSRGRLKTAA SGDQPLLGTW 360
  361 NRSTGRGSQD NTLAGGGATS LAMGGHNQYG GNYCNGTDRY PRSRSQQQGH HNAAQQAHHP 420
  421 YQLQHSASTV SHHPHAHGPP SQGGPGGPGP PHGGHPHHPH HGGAGSGGGS GPGSHGGQPH 480
  481 HQKPRRTASQ RIRAATAARK LHFVFDPAGR LCYYWSMVVS MAFLYNFWVI IYRFAFQEIN 540
  541 RRTIAIWFCL DYLSDFLYLI DILFHFRTGY LEDGVLQTDA LKLRTHYMNS TIFYIDCLCL 600
  601 LPLDFLYLSI GFNSILRSFR LVKIYRFWAF MDRTERHTNY PNLFRSTALI HYLLVIFHWN 660
  661 GCLYHIIHKN NGFGSRNWVY HDSESADVVK QYLQSYYWCT LALTTIGDLP KPRSKGEYVF 720
  721 VILQLLFGLM LFATVLGHVA NIVTSVSAAR KEFQAKLDGV KTYMRMRRVP NHLQVKVIKW 780
  781 FDYLWLTQKC SDEERAVSCL PDKLKAEIAI NVHLDTLKRV EIFQNTEAGF LCELVLRLRP 840
  841 VLFSPGDYIC RKGEVGKEMY IVNRGRLQVV ADNGKTVMAS LKAGSYFGEI SILNMGTAGN 900
  901 RRTASVRSVG YSDLFVLSKK DMWDVLKEYP AARVRLESIA VKRLEKYKKA PLEKVKYFNV 960
  961 VAMGRCQSTP GLVESCGRTS LEEMWLPPAT AGASSLMHHH QALQQQHQAS QQQPHRQEST1020
 1021 QTSSQTHGYS PRSYADRLAR ATDSPRSVSP SAHGSEERPR SRTTSHHSIR PQSQPSHTGH1080
 1081 ICDSSSQLEC YGAGVGGAGG GTTPLLGSHE VLEDEIKRLR ERLHTVESEN QALNTKLSQQ1140
 1141 QWDLENRLAE IEMQICGVSS TSSVDPENET EELERNRERA AAAIQQQEDR KDRERKAQRG1200
 1201 RPIESATGSQ SCAKYFSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle