YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8908-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.55
Transmembrane Helix	10	27	0.41
Non-Cytoplasmic	28	32	0.63
Transmembrane Helix	33	55	0.85
Cytoplasmic	56	223	0.82
Transmembrane Helix	224	246	0.87
Non-Cytoplasmic	247	266	0.79
Transmembrane Helix	267	290	0.91
Cytoplasmic	291	301	0.70
Transmembrane Helix	302	321	0.86
Non-Cytoplasmic	322	328	0.70
Transmembrane Helix	329	350	0.91
Cytoplasmic	351	359	0.77
Transmembrane Helix	360	379	0.91
Non-Cytoplasmic	380	401	0.94
Transmembrane Helix	402	423	0.91
Cytoplasmic	424	805	0.97
Transmembrane Helix	806	830	0.93
Non-Cytoplasmic	831	974	0.95
Transmembrane Helix	975	996	0.89
Cytoplasmic	997	1020	0.87
Transmembrane Helix	1021	1043	0.87
Non-Cytoplasmic	1044	1048	0.72
Transmembrane Helix	1049	1069	0.92
Cytoplasmic	1070	1079	0.77
Transmembrane Helix	1080	1100	0.89
Non-Cytoplasmic	1101	1127	0.79
Transmembrane Helix	1128	1142	0.42
Cytoplasmic	1143	1154	0.41
Transmembrane Helix	1155	1174	0.93
Non-Cytoplasmic	1175	1625	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGESPVKT QSSICLLWLV ICKTARFQFS NTLTSVIIIV GPIVVFLVYA ATALFREPQE  60
   61 ETSVKYPPVN ITTKVPYIYY SPENLVLAAV IEDVVHDLKA VGSKAFASAS ELNKALIGKD 120
  121 TYGYVGIEFD DSFSDINELP INVTVGLRFP LHLRKNPKMV WDNTSILKHS KMDVDYYQVE 180
  181 GFLVVQAKLS EALIRAKNEA VVLPEVILQH YPDVAEVDRL DNRVALGGVL FLPVTISAAY 240
  241 LAQMIVMERR DHLRDMLELM GVRAWIYWLS WFLVAFLLLS IPTVFMVLLL KWRYFSLSDS 300
  301 SLVLFFLLVY NLEVLTSAFM ISSFFSDTVG VQVAIVIVHL IGCLPWRLLL MGYVPTLPRT 360
  361 IFVCLFLNSS LAMGLQQFIK SENLRLGLHW TYLFERTDWD EFVHLGPILL FMLFGCLLRI 420
  421 LVLAYMEQLR SYQNRKWNIE KVFNEWIAVK DLNLNFYQDE ITVFLGHNDS GKSTILMLLA 480
  481 GFLRPSAGEI TINGYDLATN QRKARQSMCI CPQPNVLFEK VNARWHLQFY CRLKGLNRQE 540
  541 ASAETDKYLE IGRLQDFANT KVKNLPSGIK RMLMLCCNLC GNSKILLLDE PGTSMDPAMR 600
  601 SNMWDLLRRE RKGRCIIMAT HNMNEAEVVA DQIVVLCDAQ VIGYGTTGFL TQIAGTGSSY 660
  661 LLICTKMDTC IVAEVTNFLQ IRFPDIKLHN EFSIYVTYEL PTKYVQQYAA LFLELEEALG 720
  721 ELNLAEISVC APTLGSVFLQ MGEEMRQSWN RISSFDLLSS PSPMLSLLNL LPTFEVREDD 780
  781 GRVKCCNQWR AIVEKKRLFT LRHQKFYCMI IATPIIICLL IISFSIFIFL VDHHLSELLV 840
  841 TDLSIYPKAV FVIDSPAEGN RFERHYMANV IGQGGTVRST SGTPIDDYLL AEMESDQVKV 900
  901 QHTFLAGATF DSNANSIIAW SNNKLKHGSA LSMGLVYAAI GQELAKLDIR IVNKPYQDTV 960
  961 QQAVRGLIYA STIEFAVLVF HYLVLGTAIF AVLPIVERRS KVQHQQFSSG MSRSTYWLSH1020
 1021 LSWDYCFYIA MILPLIVVAG ITIGSVLPVI VQLLAFGFSA ISFTYLLCLM SNDFGKMFSI1080
 1081 ILYINMIGNY GFIVFLFGYC KETLFPGVLA LFIHPKSPQT RYAVIESVLL VHPHYSLCCG1140
 1141 MYEAIRMSTF SLKQLPYLIF SGAAYLTIVV FAWVPRRLNY VFKLCLDQLC SSFMLTDYQL1200
 1201 LFRSIRNEKI YPSYKDEDKE VDKMRRRLAY LTTAHYAFFP LILKNLSKRY GSFVAVRSLT1260
 1261 LDLNPFECVG LLGRNGSGKS SIFRMIVGME SITVGSIHIK GYSLKTRPKD ASRHVGFCPR1320
 1321 ELMLLSFMTG KDALRFCCLI NGIRREYIKS LVASLAECFE LVPHMNKRIS TYSNGTKRKL1380
 1381 MIAMGTLAPS LMCLDEPTAG VDMHAKYEIW SILDGIRQGG RSILLTTHNL EECEFLCTNV1440
 1441 GIMDHGSLLC YGSLSRLKHR FNMGIFVKVK MGTRAEMDDE RDNWMQITMM PPNDSEMGST1500
 1501 VGARRMMLAH LLRHHNPPVE PVKKSRTSRA QPDTTNSELN MRKDYEALLQ ELEEVFKKDH1560
 1561 PYSTVSEKYS YRGMITFCIP RGQIKWSAIF EYMENLKDEM QILYYSVSHT TFQDVFMKFV1620
 1621 RKQNQ