YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8908-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.56
Transmembrane Helix	10	27	0.41
Non-Cytoplasmic	28	32	0.62
Transmembrane Helix	33	55	0.85
Cytoplasmic	56	223	0.81
Transmembrane Helix	224	246	0.87
Non-Cytoplasmic	247	266	0.79
Transmembrane Helix	267	290	0.91
Cytoplasmic	291	301	0.69
Transmembrane Helix	302	321	0.86
Non-Cytoplasmic	322	328	0.70
Transmembrane Helix	329	350	0.90
Cytoplasmic	351	359	0.77
Transmembrane Helix	360	379	0.91
Non-Cytoplasmic	380	401	0.93
Transmembrane Helix	402	423	0.91
Cytoplasmic	424	845	0.96
Transmembrane Helix	846	870	0.93
Non-Cytoplasmic	871	1014	0.95
Transmembrane Helix	1015	1036	0.89
Cytoplasmic	1037	1060	0.87
Transmembrane Helix	1061	1083	0.87
Non-Cytoplasmic	1084	1088	0.72
Transmembrane Helix	1089	1109	0.92
Cytoplasmic	1110	1119	0.77
Transmembrane Helix	1120	1140	0.89
Non-Cytoplasmic	1141	1167	0.79
Transmembrane Helix	1168	1182	0.42
Cytoplasmic	1183	1194	0.41
Transmembrane Helix	1195	1214	0.93
Non-Cytoplasmic	1215	1665	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGESPVKT QSSICLLWLV ICKTARFQFS NTLTSVIIIV GPIVVFLVYA ATALFREPQE  60
   61 ETSVKYPPVN ITTKVPYIYY SPENLVLAAV IEDVVHDLKA VGSKAFASAS ELNKALIGKD 120
  121 TYGYVGIEFD DSFSDINELP INVTVGLRFP LHLRKNPKMV WDNTSILKHS KMDVDYYQVE 180
  181 GFLVVQAKLS EALIRAKNEA VVLPEVILQH YPDVAEVDRL DNRVALGGVL FLPVTISAAY 240
  241 LAQMIVMERR DHLRDMLELM GVRAWIYWLS WFLVAFLLLS IPTVFMVLLL KWRYFSLSDS 300
  301 SLVLFFLLVY NLEVLTSAFM ISSFFSDTVG VQVAIVIVHL IGCLPWRLLL MGYVPTLPRT 360
  361 IFVCLFLNSS LAMGLQQFIK SENLRLGLHW TYLFERTDWD EFVHLGPILL FMLFGCLLRI 420
  421 LVLAYMEQLR SYQNRKWYFP VQPSFWCRWN RRPRSDDFDV EGQETGIRGH PLIVRARNIE 480
  481 KVFNEWIAVK DLNLNFYQDE ITVFLGHNDS GKSTILMLLA GFLRPSAGEI TINGYDLATN 540
  541 QRKARQSMCI CPQPNVLFEK VNARWHLQFY CRLKGLNRQE ASAETDKYLE IGRLQDFANT 600
  601 KVKNLPSGIK RMLMLCCNLC GNSKILLLDE PGTSMDPAMR SNMWDLLRRE RKGRCIIMAT 660
  661 HNMNEAEVVA DQIVVLCDAQ VIGYGTTGFL TQIAGTGSSY LLICTKMDTC IVAEVTNFLQ 720
  721 IRFPDIKLHN EFSIYVTYEL PTKYVQQYAA LFLELEEALG ELNLAEISVC APTLGSVFLQ 780
  781 MGEEMRQSWN RISSFDLLSS PSPMLSLLNL LPTFEVREDD GRVKCCNQWR AIVEKKRLFT 840
  841 LRHQKFYCMI IATPIIICLL IISFSIFIFL VDHHLSELLV TDLSIYPKAV FVIDSPAEGN 900
  901 RFERHYMANV IGQGGTVRST SGTPIDDYLL AEMESDQVKV QHTFLAGATF DSNANSIIAW 960
  961 SNNKLKHGSA LSMGLVYAAI GQELAKLDIR IVNKPYQDTV QQAVRGLIYA STIEFAVLVF1020
 1021 HYLVLGTAIF AVLPIVERRS KVQHQQFSSG MSRSTYWLSH LSWDYCFYIA MILPLIVVAG1080
 1081 ITIGSVLPVI VQLLAFGFSA ISFTYLLCLM SNDFGKMFSI ILYINMIGNY GFIVFLFGYC1140
 1141 KETLFPGVLA LFIHPKSPQT RYAVIESVLL VHPHYSLCCG MYEAIRMSTF SLKQLPYLIF1200
 1201 SGAAYLTIVV FAWVPRRLNY VFKLCLDQLC SSFMLTDYQL LFRSIRNEKI YPSYKDEDKE1260
 1261 VDKMRRRLAY LTTAHYAFFP LILKNLSKRY GSFVAVRSLT LDLNPFECVG LLGRNGSGKS1320
 1321 SIFRMIVGME SITVGSIHIK GYSLKTRPKD ASRHVGFCPR ELMLLSFMTG KDALRFCCLI1380
 1381 NGIRREYIKS LVASLAECFE LVPHMNKRIS TYSNGTKRKL MIAMGTLAPS LMCLDEPTAG1440
 1441 VDMHAKYEIW SILDGIRQGG RSILLTTHNL EECEFLCTNV GIMDHGSLLC YGSLSRLKHR1500
 1501 FNMGIFVKVK MGTRAEMDDE RDNWMQITMM PPNDSEMGST VGARRMMLAH LLRHHNPPVE1560
 1561 PVKKSRTSRA QPDTTNSELN MRKDYEALLQ ELEEVFKKDH PYSTVSEKYS YRGMITFCIP1620
 1621 RGQIKWSAIF EYMENLKDEM QILYYSVSHT TFQDVFMKFV RKQNQ