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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: 18w-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATSSIITI IAVAACLLLL VADAHAQQQC NWQYGLTTMD IRCSVRALES GTGTPLDLQV  60
   61 AEAAGRLDLQ CSQELLHASE LAPGLFRQLQ KLSELRIDAC KLQRVPPNAF EGLMSLKRLT 120
  121 LESHNAVWGP GKTLELHGQS FQGLKELSEL HLGDNNIRQL PEGVWCSMPS LQLLNLTQNR 180
  181 IRSAEFLGFS EKLCAGSALS NANGAVSGGS ELQTLDVSFN ELRSLPDAWG ASRLRRLQTL 240
  241 SLQHNNISTL APNALAGLSS LRVLNISYNH LVSLPSEAFA GNKELRELHL QGNDLYELPK 300
  301 GLLHRLEQLL VLDLSGNQLT SHHVDNSTFA GLIRLIVLNL SNNALTRIGS KTFKELYFLQ 360
  361 ILDMRNNSIG HIEEGAFLPL YNLHTLNLAE NRLHTLDNRI FNGLYVLTKL TLNNNLVSIV 420
  421 ESQAFRNCSD LKELDLSSNQ LTEVPEAVQD LSMLKTLDLG ENQISEFKNN TFRNLNQLTG 480
  481 LRLIDNRIGN ITVGMFQDLP RLSVLNLAKN RIQSIERGAF DKNTEIEAIR LDKNFLTDIN 540
  541 GIFATLASLL WLNLSENHLV WFDYAFIPSN LKWLDIHGNY IEALGNYYKL QEEIRVTTLD 600
  601 ASHNRITEIG AMSVPNSIEL LFINNNIIGQ IQANTFVDKT RLARVDLYAN VLSKISLNAL 660
  661 RVAPVSAEKP VPEFYLGGNP FECDCSMEWL QRINNLTTRQ HPHVVDLGNI ECLMPHSRSA 720
  721 PLRPLASLSA SDFVCKYESH CPPTCHCCEY EQCECEVICP GNCSCFHDAT WATNIVDCGR 780
  781 QDLAALPNRI PQDVSDLYLD GNNMPELEVG HLTGRRNLRA LYLNASNLMT LQNGSLAQLV 840
  841 NLRVLHLENN KLTALEGTEF RSLGLLRELY LHNNMLTHIS NATFEPLVSL EVLRLDNNRL 900
  901 SSLPHLQYRH SLQGLTLGRN AWSCRCQQLR ELAQFVSDNA MVVRDAHDIY CLDAGIKREL 960
  961 ELIGNLANGP DCSDLLDASA SNISSSQDLA GGYRLPLLAA VLVLIFLVVV LIIVFVFRES1020
 1021 VRMWLFAHYG VRVCEPRFED AGKLYDAIIL HSEKDYEFVC RNIAAELEHG RPPFRLCIQQ1080
 1081 RDLPPQASHL QLVEGARASR KIILVLTRNL LATEWNRIEF RNAFHESLRG LAQKLVIIEE1140
 1141 TSVSAEAEDV AELSPYLKSV PSNRLLTCDR YFWEKLRYAI PIELSPRGNN YTLDHHERFK1200
 1201 QPVSPGMIFR QAPPPPAYYC TEEMEANYSS ATTATPSPRP TRPGGAARIV DSMPMPMRPP1260
 1261 SEHIYHSIES EYSAYDQHEA LSMIPTGLMH QHQQQQLRLH QQQQQQQQQR LLQPQFRAMP1320
 1321 QQAIPAPSAP VHLRSGSGLS QASTSTQSTA QASTSAAAAQ QQQQQQQQQA AGSEAANKNG1380
 1381 QAFLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle