YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8654-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.96
Transmembrane Helix	36	55	0.94
Non-Cytoplasmic	56	107	0.98
Transmembrane Helix	108	130	0.90
Cytoplasmic	131	137	0.91
Transmembrane Helix	138	160	0.92
Non-Cytoplasmic	161	166	0.75
Transmembrane Helix	167	188	0.91
Cytoplasmic	189	196	0.88
Transmembrane Helix	197	218	0.92
Non-Cytoplasmic	219	222	0.90
Transmembrane Helix	223	242	0.94
Cytoplasmic	243	311	0.97
Transmembrane Helix	312	329	0.95
Non-Cytoplasmic	330	338	0.68
Transmembrane Helix	339	360	0.92
Cytoplasmic	361	369	0.82
Transmembrane Helix	370	391	0.89
Non-Cytoplasmic	392	395	0.77
Transmembrane Helix	396	416	0.89
Cytoplasmic	417	426	0.72
Transmembrane Helix	427	448	0.86
Non-Cytoplasmic	449	454	0.71
Transmembrane Helix	455	476	0.93
Cytoplasmic	477	502	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRPQDPKA PKPLKPVTKT GDPIISQIGD FRRYQLFFFF IVLLCKFGTG WHTLGHIFLA  60
   61 APTPLSCKTE NVTDPCSDEC SETEFDTSVF QSTIITEWNL TCESKQLASL SQSIVMLGIL 120
  121 FGSILFGMFA DRYGRRPAFL TCCFMQLITG LIVCVSPYYW FYCLFRFLVA VATAGTMTTS 180
  181 FVLLMEIVGP KKREMVAILY QIPFNIGHAS LALFAYFIRE WRWFQFSITI FSIVFVIYIW 240
  241 LVPESPRWLF TTGKLDKSIK ILEKIAKCNK APTETIRPEI EAAYGALAAR QPVKKGTVVD 300
  301 LFRTPYMRIK TIFMANNWLV VCMVYYGTAQ YVSALGGNIF ISNAIAAGVG IPGTCLCALM 360
  361 TKYLGRKKTL LLSNGCSALG LILLACLSTQ AEAVRVTCAT IGLFGASITF PNVYLYGGEL 420
  421 FPTVVRSSGV GLCSMVGRIG SIVAPLIVDL AAYGLWVAPL IFGIFSILAM LGTIFLPETR 480
  481 GTPLPETLED GETFGRKKKD QA