YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	olf186-F-PA, olf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVWTTANNS GLETPTKSPI TSSVPRAARS SAVITTGNHQ QHHFQHVVAA AVAAATSVAT  60
   61 GHQFQQQFPL HAHPHPQHHS NSPTGSGSNS NNSAGFQRTS ISNSLLQFPP PPPPSSQNQA 120
  121 KPRGHHRTAS SSMSQSGEDL HSPTYLSWRK LQLSRAKLKA SSKTSALLSG FAMVAMVEVQ 180
  181 LDHDTNVPPG MLIAFAICTT LLVAVHMLAL MISTCILPNI ETVCNLHSIS LVHESPHERL 240
  241 HWYIETAWAF STLLGLILFL LEIAILCWVK FYDLSPPAAW SACVVLIPVM IIFMAFAIHF 300
  301 YRSLVSHKYE VTVSGIRELE MLKEQMEQDH LEHHNNIRNN GMNYGASGDI V

Type	Start	End	Confidence
Cytoplasmic	1	159	0.92
Transmembrane Helix	160	181	0.82
Non-Cytoplasmic	182	190	0.80
Transmembrane Helix	191	210	0.94
Cytoplasmic	211	246	0.87
Transmembrane Helix	247	269	0.90
Non-Cytoplasmic	270	277	0.81
Transmembrane Helix	278	300	0.94
Cytoplasmic	301	351	0.96