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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Sema-1b-PC, Sema...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSRPSSA AMLVNAIPMI LLITLSGLTI VAGWMPDVKP DLQTKQDKVL AHFIGNSTDY  60
   61 FKILDHNDEF VLVGAKDVIY NVSLNGLKEI ARLEWHSTDA DRELCALKGK HEWDCHNYLR 120
  121 VYALRPNGEV LLCGTNSYKP RCRHYTPVEV SSEEAGSAGH AHAMRYEVSR DVEAQGLCPY 180
  181 SPAHNSTYAF ADGHLYSATV ADFSGGDPLI YRENLRTEQY DLKQLNQPDF VGAIERNGYV 240
  241 LFFFRELSME VMNFGKAVYS RVARVCKNDR GGPYSHGKSW TSFLKARLNC SVPGEFPFYF 300
  301 DEIQAISPIV ESGSKSLIYA VFTTSVNAIP GSAVCAFNVD DILAAFDGEF KSQKDSQSHW 360
  361 LPVEREQVPK PRPGQCVEDS RTLTSIAVNF IKNHPLMEEA VPAVHGRPLL TKVNLHHRLT 420
  421 AIAVHPQVKS LSGAYYDVIY SGTDDGKVTK FINILSTHPN STVDRLKTVV ISEMQVLPLG 480
  481 TPIRELVIST SKNSLVVVSD GSLVSVPLHH CSHIVDCLGC LSLQDPICAW DLQTHECKNL 540
  541 ATSQHKFGTK TYLQSLNSTK KAAALLCPHI PRDAPGAETV SFVTMAPPPT EEQKLLYSNV 600
  601 GSSQGNQPSL EQQPTGGDDF GLNKITLTSM DPDDIMPNLN DPQKSTASVD EIKYASTPSF 660
  661 MLLTTIVFFT FLVGGIAGIC CVKAKSRLME AQMDESHRNH FGKPMQFKHQ NTGKDINLLM 720
  721 GSNAYTTTQK TPNLDLEKDR SHECKNSTEH LEKELPCKTS TLTKVKRTYI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle