YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309066, Nup...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFQLPTTTA APTGGATSSF SFGLSTGTPA AAPASGAATT APATKTTFSF GTPAPTAGIG  60
   61 GGDADNSKAQ APPAFGFGLG SGTASAPLTL GTQAAANPAS TTSATATGTS AAPPAFGGFT 120
  121 AQPAASVVPT IATSAPNTAA TTTGLLGGSG LGAPKTTAAA STTLTAAPSA IASTQGAAPA 180
  181 PTLSTGGAFA NLTTETKTTD SSAVSTASQL SYHQLEEHIN KWTLEFEEQE KVFTEQATQI 240
  241 NAWDKLLISN NGKIVELNDA VKKVKTDQQV LDQELEFIAT QQKELEDSLG PLEKEFVNLP 300
  301 RVDMERSQTY LMVENLDTQL KQMSEDLKEI IDNLNEANKG QDTTDPIIQI GKILNAHMNS 360
  361 LQWIESQSTN ISKKLEDIGK IQDSQKRDIF RAPF

Type	Start	End	Confidence
Signal Peptide	1	36	0.86
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	394	0.99