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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: bdg-PC, bdg-PA, ...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEQQAAG RDFKRNSNAY SSLPPTGTGA GCSGAALGSG TGTGKRARSK QHQLEHEQFG  60
   61 LSNSLSSESI RQACAYYDDE LSDEDLIEIQ QTPQAFHQQT KQPLQLQPIS FRLGDELGDE 120
  121 RSAFCGSQEM QQVPLSTPIK QAAETDEALC VLSELDAILD VHDVSQLNGT CSSGSVNSGS 180
  181 DDDKVEDYLM DLDNYLEEMD NALNREDSLI IIDGHTSLKR EPRTRTLPLS RKKKSSKKKS 240
  241 EDQEAAQGDF QREHQLRKTF SCSLRPTSQI ASSSGSLETS TEPVMDVWRR QSMRRALEQE 300
  301 DTKATVAMER EEDDIPTLLV ELPPRRDAEM RRCFSQGDCQ ASVAPTVGSQ MLTEAHIFDN 360
  361 LLQTNARASS EEPRPRQYGR RLEGPPTPVR PLILAQSRPQ SAPTRVQMRE PQLQDTPTHP 420
  421 IMSTCSELSS ARSSRMPSPV SLPSDSSSSG SSSAEHDQEP DPVQTTTMCS ASSTTPLEPL 480
  481 HQLQLLLREK CGFNSQWPHA GSRTLALIGC TLGVFNMCRF AVLTINFGGN FLLQFLLLSV 540
  541 IFGIPLLWLQ MCLGAKIRAG PVSMWKISPI CAGVGIALVM QQCFLALYST VSLAWILVYL 600
  601 RDVFPTAARS GYRWQEMAFP YRYDASNATG NLTQTVAEYF NVVVLQRLHL ANHPDASGIR 660
  661 FHVNDRQLAF YLALIWAAVF LILCKGLKSL GKLAYIIYTL PLVALAVVTA KFVYVVDPSR 720
  721 IQNIFAASDF DDFLVNSNSW TAATQETFLT WGLLGASVIA ITSRSHTNAN KAALRRDAIL 780
  781 LVLFTLIGLG LMALLALCCA QILWQHGYVY VPGSFENPDC YTSIYSLQSN TNPYLLSYPR 840
  841 SLIPHYSSFI GETYRRNRTM IHVESGFQAL RFISEIFPAV LSLASDSISW VWAAVAFATF 900
  901 AGFGLAQLCV MWKPISSALG NSTSSVLLSC VTGLLLSIPF ATEMGISILY YVDFLLGGSW 960
  961 FIPIIWTAQI FGVFLIRGRP YNGDDLVNDL RLCGSMSAFL ALSWNVLLPI GLITLSVVDY1020
 1021 KASLSNQFYY WRGKSYFTYW SRKMGSLIQI GVLLVIPVTA IIQIYRYLAH GPPDILERIQ1080
 1081 LLYRPPEEGE EPRRPSARQT ASQSRRNALG QTTEGGQHDA QNDAPPKYTP PPSYTTATGA1140
 1141 RLAKLLRQSI RRSVRRVLGD SSRTRPVLSL DAESASPAAP PDYLTILTNP AGSSFNADPS1200
 1201 PASSSSPESI EIDQRPVGYS QRSQSLGRKL HRSGASTLER RPYTAEDVVT ILRSSVRHRQ1260
 1261 SQGGGNLVTA STLPRPPTAA MSTHLEDASF RSIENLVLNA EPPDRTPGVE LELELEAGQA1320
 1321 EECARNNTSV I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle