YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Dh44-R1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHNHIDSV NASGSDPLLD LHNLDGIGES VELQCLVQEH IEASTYGNDS GHCLTQFDSI  60
   61 LCWPRTARGT LAVLQCMDEL QGIHYDSSKN ATRFCHANGT WEKYTNYDAC AHLPAPESVP 120
  121 EFEVIVELPT IIYYIGYTLS LVSLSLALIV FAYFKELRCL RNTIHANLFF TYIMSALFWI 180
  181 LLLSVQISIR SGVGSCIALI TLFHFFTLTN FFWMLVEGLY LYMLVVKTFS GDNLRFNIYA 240
  241 SIGWGGPALF VVTWAVAKSL TVTYSTPEKY EINCPWMQET HVDWIYQGPV CAVLIINLTF 300
  301 LLRIMWVLIT KLRSANTVET RQYRKAAKAL LVLIPLFGIT YLVVLAGPSE SGLMGHMFAV 360
  361 LRAVLLSTQG FSVSLFYCFL NSEVRNALRH HISTWRDTRT IQLNQNRRYT TKSFSKGGGS 420
  421 PRAESMRPLT SYYGRGKRES CVSSATTTTL VGQHAPLSLH RGSNNALHTM PTLAANAMSS 480
  481 GSTLSVMPRA ISPLMRQGLE ENSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	130	0.97
Transmembrane Helix	131	154	0.92
Cytoplasmic	155	163	0.92
Transmembrane Helix	164	187	0.84
Non-Cytoplasmic	188	196	0.71
Transmembrane Helix	197	222	0.77
Cytoplasmic	223	235	0.83
Transmembrane Helix	236	257	0.93
Non-Cytoplasmic	258	284	0.97
Transmembrane Helix	285	307	0.94
Cytoplasmic	308	326	0.94
Transmembrane Helix	327	347	0.92
Non-Cytoplasmic	348	357	0.83
Transmembrane Helix	358	380	0.92
Cytoplasmic	381	504	0.89