YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8394-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	147	0.54
Transmembrane Helix	148	166	0.45
Non-Cytoplasmic	167	167	0.23
Transmembrane Helix	168	186	0.67
Cytoplasmic	187	233	0.77
Transmembrane Helix	234	254	0.87
Non-Cytoplasmic	255	263	0.72
Transmembrane Helix	264	283	0.89
Cytoplasmic	284	290	0.73
Transmembrane Helix	291	313	0.87
Non-Cytoplasmic	314	328	0.82
Transmembrane Helix	329	349	0.87
Cytoplasmic	350	364	0.74
Transmembrane Helix	365	385	0.83
Non-Cytoplasmic	386	404	0.75
Transmembrane Helix	405	425	0.73
Cytoplasmic	426	455	0.87
Transmembrane Helix	456	474	0.94
Non-Cytoplasmic	475	479	0.69
Transmembrane Helix	480	500	0.91
Cytoplasmic	501	517	0.84
Transmembrane Helix	518	536	0.92
Non-Cytoplasmic	537	549	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIAKLKAT PLPPLRNILN VAVQTARQQI PERKDYEQPP GSTAQQHHHS QQAQHKAMEA  60
   61 GMDGGDTTEM SSNPFRNAGS WTNDGEGGGD GDGEYRNEYQ STSFNEYDGR YQQTDGFRQG 120
  121 SIASEGSSFV CEGEGGGGCK IDEFQAAWNV TNAIQGMFIV SLPFAVLHGG YWAIVAMVGI 180
  181 AHICCYTGKV LVQCLYEPDP ATGQMVRVRD SYVAIAKVCF GPKLGARAVS IAQLIELLMT 240
  241 CILYVVVCGD LLAGTYPQGS FDSRSWMLFV GIFLLPMGFL KSLKMVSTLS FWCTMSHIVI 300
  301 NAVILGYCLL QIGDWGWSKV RFSIDMENFP ISLGVIVFSY TSQIFLPTLE GNMIDRSKFN 360
  361 WMLDWSHIAA AVFKAGFGYI CFLTFQNDTQ QVITNNLHSQ GFKGMVNFFL VIKALLSYPL 420
  421 PYYAACELLE RNFFRGPPKT KFPTIWNLDG ELKVWGLGFR VGVIVSTILM AIFIPHFSIL 480
  481 MGFIGSFTGT MLSFIWPCYF HIKIKGHLLD QKEIAKDYLI IGLGVLFGVI GIYDSGNALI 540
  541 NAFEIGLPF