YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vg-PA
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSCPEVMY GAYYPYLYGR AGTSRSFYQY ERFNQDLYSS SGVNLAASSS ASGSSHSPCS  60
   61 PILPPSVSAN AAAAVAAAAH NSAAAAVAVA ANQASSSGGI GGGGLGGLGG LGGGPASGLL 120
  121 GSNVVPGSSS VGSVGLGMSP VLSGAAGHSL HSSHRTHAHS LAHAHTHPHS HTHTHTHQTK 180
  181 EEDLIVPRSE AEARLVGSQQ HQHHNESSCS SGPDSPRHAH SHSHPLHGGG GATGGPSSAG 240
  241 GTGSGGGDGG GTGAIPKNLP ALETPMGSGG GGLAGSGQGQ AQYLSASCVV FTNYSGDTAS 300
  301 QVDEHFSRAL NYNNKDSKES SSPMSNRNFP PSFWNSNYVH PIPAPTHHQV SDLYGTATDT 360
  361 GYATDPWVPH AAHYGSYAHA AHAHAAHAHA YHHNMAQYGS LLRLPQQYAS HGSRLHHDQQ 420
  421 TAHALEYSSY PTMAGLEAQV AQVQESSKDL YWF

Type	Start	End	Confidence
Cytoplasmic	1	70	0.67
Transmembrane Helix	71	91	0.55
Non-Cytoplasmic	92	98	0.50
Transmembrane Helix	99	121	0.71
Cytoplasmic	122	128	0.34
Transmembrane Helix	129	150	0.66
Non-Cytoplasmic	151	453	0.65