YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S2P-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFVFFIVL ASLYGVLYFF DRFFKSCMHY PYDAFLKNTG LSINFMSLHW HTSAFNRTLL  60
   61 RWGSAGNSCT RRVMITSFNV GVLVTFSLLP IGLILLIATI FSSGEQDSSS SVSSPVGVPV 120
  121 QLEILLPGVN LPLEEIGYYI TTLVLCLVVH EMGHALAAVM EDVPVTGFGI KFIFCLPLAY 180
  181 TELSHDHLNS LRWFRKLRVL CAGIWHNFVF AGVCYLLIST VGITMSPLYA YNQHVVVTEL 240
  241 TRKSPLRGER GLQVDNQITQ VNGCPVNSEE SWVTCLQNSL KLKPGYCVSA DFVQLNDESS 300
  301 AISHHSIDGQ LQCCDELNPN VSCFEVVEDA NGDVPVELPQ HVCLNVRRTL EEVSEHCSSG 360
  361 VCNEGFCLRP LIRNITAIMT FKRQNFRGEK LPPVIYVGHP WDVTRTVEVS AFVPRYSLLK 420
  421 AAWPDAWLLL LKYNVVFSIG LALINAIPCF GFDGAHITST VIHSFLVGRV DQHAKRDIIS 480
  481 LIITSVGSLL FALALLKVAW LSFLRPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.52
Transmembrane Helix	4	24	0.72
Cytoplasmic	25	77	0.66
Transmembrane Helix	78	101	0.89
Non-Cytoplasmic	102	135	0.76
Transmembrane Helix	136	157	0.71
Cytoplasmic	158	164	0.53
Transmembrane Helix	165	184	0.67
Non-Cytoplasmic	185	201	0.60
Transmembrane Helix	202	225	0.80
Cytoplasmic	226	429	0.65
Transmembrane Helix	430	457	0.70
Non-Cytoplasmic	458	477	0.47
Transmembrane Helix	478	501	0.90
Cytoplasmic	502	508	0.46