YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8234-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	48	0.92
Non-Cytoplasmic	49	71	0.86
Transmembrane Helix	72	93	0.91
Cytoplasmic	94	101	0.79
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	129	0.65
Transmembrane Helix	130	148	0.95
Cytoplasmic	149	157	0.84
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	184	0.80
Transmembrane Helix	185	204	0.92
Cytoplasmic	205	270	0.94
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	305	0.84
Transmembrane Helix	306	326	0.94
Cytoplasmic	327	332	0.92
Transmembrane Helix	333	355	0.91
Non-Cytoplasmic	356	366	0.81
Transmembrane Helix	367	390	0.86
Cytoplasmic	391	401	0.82
Transmembrane Helix	402	423	0.87
Non-Cytoplasmic	424	432	0.82
Transmembrane Helix	433	454	0.92
Cytoplasmic	455	488	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILMRADTH VSFSVPADGL KANFTFSQVL AALSVSLCSL VVGFVSAYTS PALVSMTDRT  60
   61 ITSFEVTKDA GSWVGGIMPL AALAGGITGG PLIEYLGRRS TILATAVPFI VSSLLIACAV 120
  121 NVIMILCGRF LTGFCVGIAS LSLPVYLGET LQPEVRGTLG LLPTALGNIG ILVCYVAGSF 180
  181 MNWSMLAFLG AALPVPFLIL MIIIPETPRW FVNRGQEERA RKALKWLRGK EADVEPELKE 240
  241 LMQSQADADR QATQNTCLEL FKRNNLKPLS ISLGLMFFQQ FSGINAVIFY TVQIFKDAGS 300
  301 TIDSNLSTII VGVVNFFATF MGIILIDRLG RKILLYVSDI AMIVTLSILG GFFYCKAHGP 360
  361 DVSHLGWLPL TCFVIYILGF SLGFGPIPWL MMGEILPAKI RGPAASVVTA FNWFCTFVVT 420
  421 KTFQDLTVAM GAHGAFWLFG AICIVGLFFV IIFVPETRGK SLEEIERKMM GRVPMSSVVN 480
  481 IKPFPFNM