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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sns-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQQQHQRH QQHQQHQQQQ QQQQQQQHIK WQQHATKRRR CRQHWIKHLQ LLRLLAVIVL  60
   61 ASAPVPSHAQ QQKFRTTPHD LQVLEGAEAM MRCEVANVAG AVQWTKDGFA LGFSAVIPGF 120
  121 PRYSVLGDRK QGIYNLRISN ASINDDADYQ CQVGPARLNS AIRANAKLTV ISPPASIEIK 180
  181 GYSHNSKVEV RENQDLQLKC IVANAKPAAQ IVWYRGNVEY KPEKREDTVE ESTAKRFTTT 240
  241 SSLKLKPGPD DDYTEYTCQA RHKALSPDMP MRATVQLSVL YPPGPPYIEG YSAGETLRRG 300
  301 QTVELMCRSR GGNPPAQLIW YKNGSQIRMA YRTSGRLSEN IYTFTAEAGD NKARFRCEAS 360
  361 NVMSQNPLKA EVELSVLFAP THVTVMGPTE ARVGDIVPLT CTTAPSNPPA EIKWMVGGRQ 420
  421 VRNATSKTIV SPEGGWTTTS NITAVVEPNK RSLVVICHGL NMQLTENVVS THTINVLYPP 480
  481 APPLISGYME GQIIPAGSVQ KLLCVSSGGN PLATLTWYKN DKRINSVIRA ADKSVSAEIT 540
  541 ILANVSDNQA QYRCEASNSA TEIPLFQSTT LSVHFAPETV KIRIEPEELR PGMEATIICD 600
  601 SSSSNPPAKL SWWKDGIPIE GINNTSKPGL WGGTVSTLEF RVNVTQEMNG QVYTCQSANE 660
  661 ALQRSAHEAV SLDVLYRPKF VPPPSSTAVG VEGESLQVSL QTRANPTPVT YKWTKDGTTI 720
  721 PQDGDHRIFA DGGSLNFTRL HRDDAGIYSC SASNSQGGAT LNITVVVEYG TTIKSVSENI 780
  781 VVNPGEDAML SCTVEGKPLT EEHVKWERVG YDMTVKTSTT FANGTSYLHI KDAKREDVGN 840
  841 FRCVADNRVD NPTNRDILLI VKFAPEIAKT PTLLRAASGT GERGRLPCRA QGSPKPQFIW 900
  901 RQDKKDLPIN RTYKYEVEER KIDSLTYEST LIVDKVAPAD YGAYECVARN ELGEAVETVR 960
  961 LEITSQPDPP LSLNILNVTH DTVTLAWTPG FDGGLKASYR VRYRMADREQ YKYIDGLPNS1020
 1021 HKLTIGGLRM NTLYLFSVMS WNELGQSSYL PDLARAETKG LELMPAELTE DSSNTPNLVI1080
 1081 IGISLAAFGF LLVNASLVAW FFVHQRRKKV AETTNQPAKT ATIEMYAPSS YNDTVTGETL1140
 1141 SSVSEKSESY SNEGSSQPEY IDEVRKKAAS TYLVEGSDMP PPRYQKDGTL PVIYPNNVVN1200
 1201 ACTLPHPRHN NGSAAIHMTR DDQMLISKGV YIPSPSPAPP PDGSYYNMNS DRYLSYPPME1260
 1261 YPAALDFTAQ PMPMAHLQPM TVTSLATNGG PTLIGNGSVA AVAGGSGTLR RGILRGVVGV1320
 1321 PQPDVTHHTS TVGGSPMQML HDLHPVNLSA STLTTSTTLN GSLPTATATL PRQPHGILKD1380
 1381 PNRNKQQQQQ QQQQQQQQQL QHQQQLLNAS LVGVGVPVSA PLGSLQILNL PPASGGLGNN1440
 1441 LLMTTNAFDP TTVGLSSFGA VSQAGGIPVA YTDADGHLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle