YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptc-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	428	0.86
Transmembrane Helix	429	448	0.94
Cytoplasmic	449	459	0.84
Transmembrane Helix	460	484	0.89
Non-Cytoplasmic	485	492	0.73
Transmembrane Helix	493	513	0.92
Cytoplasmic	514	528	0.92
Transmembrane Helix	529	550	0.90
Non-Cytoplasmic	551	559	0.69
Transmembrane Helix	560	582	0.92
Cytoplasmic	583	651	0.98
Transmembrane Helix	652	671	0.59
Non-Cytoplasmic	672	677	0.53
Transmembrane Helix	678	698	0.89
Cytoplasmic	699	953	0.67
Transmembrane Helix	954	976	0.86
Non-Cytoplasmic	977	978	0.41
Transmembrane Helix	979	1004	0.80
Cytoplasmic	1005	1010	0.48
Transmembrane Helix	1011	1033	0.91
Non-Cytoplasmic	1034	1048	0.55
Transmembrane Helix	1049	1073	0.81
Cytoplasmic	1074	1079	0.52
Transmembrane Helix	1080	1103	0.90
Non-Cytoplasmic	1104	1286	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRDSLPRVP DTHGDVVDEK LFSDLYIRTS WVDAQVALDQ IDKGKARGSR TAIYLRSVFQ  60
   61 SHLETLGSSV QKHAGKVLFV AILVLSTFCV GLKSAQIHSK VHQLWIQEGG RLEAELAYTQ 120
  121 KTIGEDESAT HQLLIQTTHD PNASVLHPQA LLAHLEVLVK ATAVKVHLYD TEWGLRDMCN 180
  181 MPSTPSFEGI YYIEQILRHL IPCSIITPLD CFWEGSQLLG PESAVVIPGL NQRLLWTTLN 240
  241 PASVMQYMKQ KMSEEKISFD FETVEQYMKR AAIGSGYMEK PCLNPLNPNC PDTAPNKNST 300
  301 QPPDVGAILS GGCYGYAAKH MHWPEELIVG GAKRNRSGHL RKAQALQSVV QLMTEKEMYD 360
  361 QWQDNYKVHH LGWTQEKAAE VLNAWQRNFS REVEQLLRKQ SRIATNYDIY VFSSAALDDI 420
  421 LAKFSHPSAL SIVIGVAVTV LYAFCTLLRW RDPVRGQSSV GVAGVLLMCF STAAGLGLSA 480
  481 LLGIVFNAAS TQVVPFLALG LGVDHIFMLT AAYAESNRRE QTKLILKKVG PSILFSACST 540
  541 AGSFFAAAFI PVPALKVFCL QAAIVMCSNL AAALLVFPAM ISLDLRRRTA GRADIFCCCF 600
  601 PVWKEQPKVA PPVLPLNNNN GRGARHPKSC NNNRVPLPAQ NPLLEQRADI PGSSHSLASF 660
  661 SLATFAFQHY TPFLMRSWVK FLTVMGFLAA LISSLYASTR LQDGLDIIDL VPKDSNEHKF 720
  721 LDAQTRLFGF YSMYAVTQGN FEYPTQQQLL RDYHDSFVRV PHVIKNDNGG LPDFWLLLFS 780
  781 EWLGNLQKIF DEEYRDGRLT KECWFPNASS DAILAYKLIV QTGHVDNPVD KELVLTNRLV 840
  841 NSDGIINQRA FYNYLSAWAT NDVFAYGASQ GKLYPEPRQY FHQPNEYDLK IPKSLPLVYA 900
  901 QMPFYLHGLT DTSQIKTLIG HIRDLSVKYE GFGLPNYPSG IPFIFWEQYM TLRSSLAMIL 960
  961 ACVLLAALVL VSLLLLSVWA AVLVILSVLA SLAQIFGAMT LLGIKLSAIP AVILILSVGM1020
 1021 MLCFNVLISL GFMTSVGNRQ RRVQLSMQMS LGPLVHGMLT SGVAVFMLST SPFEFVIRHF1080
 1081 CWLLLVVLCV GACNSLLVFP ILLSMVGPEA ELVPLEHPDR ISTPSPLPVR SSKRSGKSYV1140
 1141 VQGSRSSRGS CQKSHHHHHK DLNDPSLTTI TEEPQSWKSS NSSIQMPNDW TYQPREQRPA1200
 1201 SYAAPPPAYH KAAAQQHHQH QGPPTTPPPP FPTAYPPELQ SIVVQPEVTV ETTHSDSNTT1260
 1261 KVTATANIKV ELAMPGRAVR SYNFTS