YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sut2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.90
Transmembrane Helix	15	37	0.88
Non-Cytoplasmic	38	70	0.94
Transmembrane Helix	71	94	0.89
Cytoplasmic	95	101	0.87
Transmembrane Helix	102	124	0.90
Non-Cytoplasmic	125	130	0.87
Transmembrane Helix	131	152	0.91
Cytoplasmic	153	162	0.80
Transmembrane Helix	163	184	0.92
Non-Cytoplasmic	185	195	0.76
Transmembrane Helix	196	215	0.96
Cytoplasmic	216	279	0.95
Transmembrane Helix	280	303	0.74
Non-Cytoplasmic	304	318	0.73
Transmembrane Helix	319	341	0.90
Cytoplasmic	342	348	0.92
Transmembrane Helix	349	371	0.93
Non-Cytoplasmic	372	377	0.93
Transmembrane Helix	378	404	0.84
Cytoplasmic	405	416	0.88
Transmembrane Helix	417	439	0.88
Non-Cytoplasmic	440	446	0.68
Transmembrane Helix	447	466	0.95
Cytoplasmic	467	491	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVMHVTPP KVNGWTPLLM LICLTVTLGT TIPVGYFFGV LNAPAEIIKK WCQDILANEY  60
   61 DTIVTAGQLD ILWTSIVSIY LIGGICGSCF SAVLCDKYGR KGCLVISSVL FVVSGILFTW 120
  121 CRAAKSLEML MTGRFLGGIA SALIFTAQPM YLLESAPSEL SGSVGVFTCI GVTGGILLAQ 180
  181 VATLSHLLGS ERLWPYALSF YSLLVMASLV LLWWFPESPR WLYLHKRDSA ASEKALLRLR 240
  241 GRNTEEEVHQ ELLEMKATLE AKSSSEVSSL CSVLRNSELW LPLLLVCSFQ ATQQLSGINA 300
  301 IFFYSLSILT NAGFSDGAAT WLNLGIGSFN LCTSLLGPLL IRRFPRRPLM MISCSMCALA 360
  361 LLAMSLGLFF LERSESTVLT YFCAAFILTF ILGFQLGLGP IAYFIGSELL EDSPRPVAMS 420
  421 MGSLFSWIGN FLVGMCFPLL QSVWSSFAFI PCMCVCIYCL LLTWRYLPET RGREPKDVKL 480
  481 LMSQGLSSKL N