YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rtnl1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGSKRYSR NNSNGNFQPL PERGPVESLI YWRDVKKSGI VFGAGLITLA AISSFSVISV  60
   61 FAYLSLLTLF GTVAFRIYKS VTQAVQKTNE GHPFKDYLEL DLTLSHEKVQ NIAGVAVAHI 120
  121 NGFISELRRL FLVEDIIDSI KFGVILWVFT YVGAWFNGMT LVILAFVSLF TLPKVYENNK 180
  181 QSIDTHLDLV RSKLTEITDK IRVAIPIGNK KPEAAAESEK DK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.94
Transmembrane Helix	40	64	0.89
Non-Cytoplasmic	65	150	0.80
Transmembrane Helix	151	172	0.87
Cytoplasmic	173	222	0.76