YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA1R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPYISAFQA AYIGIEVLIA LVSVPGNVLV IWAVKVNQAL RDATFCFIVS LAVADVAVGA  60
   61 LVIPLAILIN IGPQTYFHTC LMVACPVLIL TQSSILALLA IAVDRYLRVK IPLRYKTVVT 120
  121 QRRAAVAIAG CWILSLVVGL TPMFGWNNLS VVEQDWRANG SVGEPVIKCE FEKVISMEYM 180
  181 VYFNFFVWVL PPLLLMVLIY LEVFYLIRKQ LNKKVSASSG DPQKYYGKEL KIAKSLALIL 240
  241 FLFALSWLPL HILNCITLFC PTCQKPSILI YIAIFLTHGN SAMNPIVYAF RIHKFRVTFL 300
  301 KIWNDHFRCQ PKPPIDEDLP EEKAED

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	34	0.91
Cytoplasmic	35	44	0.87
Transmembrane Helix	45	68	0.93
Non-Cytoplasmic	69	79	0.77
Transmembrane Helix	80	103	0.92
Cytoplasmic	104	123	0.91
Transmembrane Helix	124	146	0.90
Non-Cytoplasmic	147	184	0.97
Transmembrane Helix	185	206	0.92
Cytoplasmic	207	235	0.93
Transmembrane Helix	236	260	0.82
Non-Cytoplasmic	261	267	0.90
Transmembrane Helix	268	290	0.89
Cytoplasmic	291	326	0.95