YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSN2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.97
Transmembrane Helix	88	109	0.89
Non-Cytoplasmic	110	138	0.95
Transmembrane Helix	139	160	0.93
Cytoplasmic	161	166	0.92
Transmembrane Helix	167	189	0.91
Non-Cytoplasmic	190	200	0.83
Transmembrane Helix	201	221	0.89
Cytoplasmic	222	226	0.80
Transmembrane Helix	227	247	0.87
Non-Cytoplasmic	248	251	0.80
Transmembrane Helix	252	274	0.81
Cytoplasmic	275	287	0.89
Transmembrane Helix	288	307	0.57
Non-Cytoplasmic	308	385	0.61
Transmembrane Helix	386	408	0.90
Cytoplasmic	409	414	0.61
Transmembrane Helix	415	434	0.70
Non-Cytoplasmic	435	448	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFMASDSE EEVCDERTSL MSAESPTSRS CQDSRPGPED GENTAQWRSQ ENEDDCEEDP  60
   61 DHYACSGVPG RPSGLEEELT LKYGAKHVIM LFVPVTLCMI VVVATIKSVR FYTEKNGQLI 120
  121 YTPFTEDTPS VGQRLLNSVL NTLIMISVIV VMTIFLVVLY KYRCYKFIHG WLIMSSLMLL 180
  181 FLFTYIYLGE VFKTYNVAMD YPTLFLAVWN FGAVGMVCIH WKGPLVLQQA YLIVISALMA 240
  241 LVFIKYLPEW SAWVILGAIS VYDLVAVLCP KGPLRMLVET AQERNEPIFP ALIYSSAMVW 300
  301 TVGMAKLDPS SQGALQLPYD PEMEEDSYDS FGEPSYPEAF EAPQPGYPGE EPEEEEERGV 360
  361 KLGLGDFIFY SVLVGKAAAT GNGDWSTTLA CFIAILIGLC LTLLLLAVFK KALPALPISI 420
  421 TFGLIFYFST DNLVRPFMDT LASHQLYI