YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA2AR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSVYITVE LAIAVLAILG NVLVCWAVWI NSNLQNVTNF FVVSLAAADI AVGVLAIPFA  60
   61 ITISTGFCAA CHGCLFFACF VLVLTQSSIF SLLAIAIDRY IAIRIPLRYN GLVTGVRAKG 120
  121 IIAICWVLSF AIGLTPMLGW NNCSQKDGNS TKTCGEGRVT CLFEDVVPMN YMVYYNFFAF 180
  181 VLLPLLLMLA IYLRIFLAAR RQLKQMESQP LPGERTRSTL QKEVHAAKSL AIIVGLFALC 240
  241 WLPLHIINCF TFFCSTCRHA PPWLMYLAII LSHSNSVVNP FIYAYRIREF RQTFRKIIRT 300
  301 HVLRRQEPFQ AGGSSAWALA AHSTEGEQVS LRLNGHPLGV WANGSATHSG RRPNGYTLGL 360
  361 GGGGSAQGSP RDVELPTQER QEGQEHPGLR GHLVQARVGA SSWSSEFAPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	30	0.90
Cytoplasmic	31	39	0.82
Transmembrane Helix	40	61	0.93
Non-Cytoplasmic	62	72	0.65
Transmembrane Helix	73	97	0.88
Cytoplasmic	98	114	0.89
Transmembrane Helix	115	135	0.88
Non-Cytoplasmic	136	176	0.90
Transmembrane Helix	177	196	0.96
Cytoplasmic	197	224	0.96
Transmembrane Helix	225	247	0.87
Non-Cytoplasmic	248	262	0.83
Transmembrane Helix	263	285	0.89
Cytoplasmic	286	410	0.89