YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRA6_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLLPWLFS LLWIENAQAQ LEDEGNFYSE NVSRILDNLL EGYDNRLRPG FGGAVTEVKT  60
   61 DIYVTSFGPV SDVEMEYTMD VFFRQTWTDE RLKFKGPAEI LSLNNLMVSK IWTPDTFFRN 120
  121 GKKSIAHNMT TPNKLFRLMH NGTILYTMRL TINADCPMRL VNFPMDGHAC PLKFGSYAYP 180
  181 KSEIIYTWKK GPLYSVEVPE ESSSLLQYDL IGQTVSSETI KSNTGEYVIM TVYFHLQRKM 240
  241 GYFMIQIYTP CIMTVILSQV SFWINKESVP ARTVFGITTV LTMTTLSISA RHSLPKVSYA 300
  301 TAMDWFIAVC FAFVFSALIE FAAVNYFTNL QSQKAERQAQ TAAKPPVAKS KTTESLEAEI 360
  361 VVHSDSKYHL KKRISSLTLP IVPSSEASKV LSRTPILPST PVTPPLLLPA IGGTSKIDQY 420
  421 SRILFPVAFA GFNLVYWIVY LSKDTMEVSS TVE

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	241	0.99
Transmembrane Helix	242	263	0.89
Cytoplasmic	264	272	0.77
Transmembrane Helix	273	294	0.87
Non-Cytoplasmic	295	304	0.81
Transmembrane Helix	305	327	0.91
Cytoplasmic	328	421	0.89
Transmembrane Helix	422	440	0.84
Non-Cytoplasmic	441	453	0.69