YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSTSIPVV KALRSQVSDY GNYDIIVRHY NYTGKLNIGV EKDHGIKLTS VVFILICCLI  60
   61 ILENIFVLLT IWKTKKFHRP MYYFIGNLAL SDLLAGVAYT ANLLLSGATT YKLTPAQWFL 120
  121 REGSMFVALS ASVFSLLAIA IERYITMLKM KLHNGSNSSR SFLLISACWV ISLILGGLPI 180
  181 MGWNCISSLS SCSTVLPLYH KHYILFCTTV FTLLLLSIVI LYCRIYSLVR TRSRRLTFRK 240
  241 NISKASRSSE KSLALLKTVI IVLSVFIACW APLFILLLLD VGCKAKTCDI LYKAEYFLVL 300
  301 AVLNSGTNPI IYTLTNKEMR RAFIRIISCC KCPNGDSAGK FKRPIIPGME FSRSKSDNSS 360
  361 HPQKDDGDNP ETIMSSGNVN SSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.95
Transmembrane Helix	49	72	0.88
Cytoplasmic	73	81	0.89
Transmembrane Helix	82	103	0.88
Non-Cytoplasmic	104	122	0.84
Transmembrane Helix	123	141	0.93
Cytoplasmic	142	161	0.83
Transmembrane Helix	162	183	0.93
Non-Cytoplasmic	184	201	0.94
Transmembrane Helix	202	226	0.91
Cytoplasmic	227	252	0.98
Transmembrane Helix	253	276	0.90
Non-Cytoplasmic	277	295	0.87
Transmembrane Helix	296	315	0.85
Cytoplasmic	316	383	0.89