YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIKNNPEY SSFFGVMGAS SAMVFSAMGA AYGTAKSGTG IAAMSVMRPE LIMKSIIPVV  60
   61 MAGIIAIYGL VVAVLIANSL TDGITLYRSF LQLGAGLSVG LSGLAAGFAI GIVGDAGVRG 120
  121 TAQQPRLFVG MILILIFAEV LGLYGLIVAL ILSTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.56
Transmembrane Helix	13	35	0.89
Cytoplasmic	36	54	0.53
Transmembrane Helix	55	77	0.92
Non-Cytoplasmic	78	89	0.53
Transmembrane Helix	90	114	0.85
Cytoplasmic	115	126	0.49
Transmembrane Helix	127	152	0.87
Non-Cytoplasmic	153	155	0.54