YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAE1A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAAVTKRH HFMIQKLLIL LSYGYTNGLD DAHSLRCNLT IKDPTPADPL WYEAKCLVDE  60
   61 ILILHLSNIN KTMTSGDPGE TANATEVGEC LTQPLKDLCQ KLRNKVSNTK VDTHKTNGYP 120
  121 HLQVTMIYLQ SQGQIPSATW EFNISDSYFF TFYTENMSWR SANDESGVIM NKWKDDGEFV 180
  181 KRLKFLIPEC RQEVDEFLKQ PKEKPRSTSR SPSITQLTST SPLPPPSHST SKKGFISVGL 240
  241 IFISLLFAFA FAM

Type	Start	End	Confidence
Cytoplasmic	1	233	0.57
Transmembrane Helix	234	252	0.94
Non-Cytoplasmic	253	253	0.59