YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSX3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARATFDMNA AGLEARGGGH TEHGPLPFSV ESLLEAERVP GSESGELGVE RPLGASKPGA  60
   61 WPPPVAHSCP PRAPSPPPCT LRKHKTNRKP RTPFTTAQLL ALERKFHQKQ YLSIAERAEF 120
  121 SSSLSLTETQ VKIWFQNRRA KAKRLQEAEL EKLKLAAKPL LPAAFALPFP LGTQLHSSAA 180
  181 TFGGNAVPGI LAGPVAAYGM YYLS

Type	Start	End	Confidence
Cytoplasmic	1	154	0.65
Transmembrane Helix	155	172	0.34
Non-Cytoplasmic	173	178	0.54
Transmembrane Helix	179	202	0.68
Cytoplasmic	203	204	0.41