YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srb-17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDFAVEITD EFCQIAFPGA FHPAFLLVKL YHILLSVISM GSIIYFFLNY SNLLAFHFNI  60
   61 KILFFFQFCS CFLQSATLAI SQTHHLVLAL IANGPCDVIL APALFALFNL PLIFSMLCME 120
  121 FSQVLMVIER TLASCLFVCY EKTTKTIGFV LTSFAVIVPG LTCLYMYYDD KFNYPQMSAM 180
  181 ATSPSSKLRI NYIFITINVL NVLTLMHSIG LYRHNKQKIN MVKGRDHFIL SSRFQMNENV 240
  241 SSSKLLWRLS CAQLIIFLLY GCAMYSLRIF LPGERSAVWQ AVTEFCYTPP LYCAIMPLIC 300
  301 IVCAQNSLKQ RNSKVQSLIT LRSVGQEGWD NYQGMLQKQW E

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.64
Transmembrane Helix	28	49	0.90
Cytoplasmic	50	59	0.54
Transmembrane Helix	60	81	0.84
Non-Cytoplasmic	82	97	0.56
Transmembrane Helix	98	127	0.71
Cytoplasmic	128	146	0.79
Transmembrane Helix	147	168	0.95
Non-Cytoplasmic	169	189	0.93
Transmembrane Helix	190	211	0.92
Cytoplasmic	212	244	0.95
Transmembrane Helix	245	269	0.83
Non-Cytoplasmic	270	285	0.85
Transmembrane Helix	286	308	0.77
Cytoplasmic	309	341	0.90