YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLN3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.73
Transmembrane Helix	38	60	0.73
Non-Cytoplasmic	61	94	0.63
Transmembrane Helix	95	115	0.69
Cytoplasmic	116	127	0.58
Transmembrane Helix	128	146	0.89
Non-Cytoplasmic	147	151	0.56
Transmembrane Helix	152	175	0.81
Cytoplasmic	176	180	0.70
Transmembrane Helix	181	203	0.89
Non-Cytoplasmic	204	211	0.67
Transmembrane Helix	212	231	0.94
Cytoplasmic	232	279	0.80
Transmembrane Helix	280	298	0.88
Non-Cytoplasmic	299	318	0.54
Transmembrane Helix	319	337	0.51
Cytoplasmic	338	343	0.79
Transmembrane Helix	344	365	0.89
Non-Cytoplasmic	366	370	0.76
Transmembrane Helix	371	393	0.88
Cytoplasmic	394	406	0.88
Transmembrane Helix	407	430	0.82
Non-Cytoplasmic	431	438	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGCAGSRRR FSDSEGEETV PEPRLPLLDH QGAHWKNAVG FWLLGLCNNF SYVVMLSAAH  60
   61 DILSHKRTSG NQSHVDPGPT PIPHNSSSRF DCNSVSTAAV LLADILPTLV IKLLAPLGLH 120
  121 LLPYSPRVLV SGICAAGSFV LVAFSHSVGT SLCGVVFASI SSGLGEVTFL SLTAFYPRAV 180
  181 ISWWSSGTGG AGLLGALSYL GLTQAGLSPQ QTLLSMLGIP ALLLASYFLL LTSPEAQDPG 240
  241 GEEEAESAAR QPLIRTEAPE SKPGSSSSLS LRERWTVFKG LLWYIVPLVV VYFAEYFINQ 300
  301 GLFELLFFWN TSLSHAQQYR WYQMLYQAGV FASRSSLRCC RIRFTWALAL LQCLNLVFLL 360
  361 ADVWFGFLPS IYLVFLIILY EGLLGGAAYV NTFHNIALET SDEHREFAMA ATCISDTLGI 420
  421 SLSGLLALPL HDFLCQLS