YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157169762, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.54
Transmembrane Helix	57	77	0.90
Cytoplasmic	78	94	0.85
Transmembrane Helix	95	116	0.90
Non-Cytoplasmic	117	122	0.70
Transmembrane Helix	123	143	0.80
Cytoplasmic	144	151	0.62
Transmembrane Helix	152	168	0.90
Non-Cytoplasmic	169	199	0.73
Transmembrane Helix	200	220	0.83
Cytoplasmic	221	238	0.88
Transmembrane Helix	239	259	0.92
Non-Cytoplasmic	260	266	0.85
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	303	0.83
Transmembrane Helix	304	322	0.95
Non-Cytoplasmic	323	341	0.92
Transmembrane Helix	342	362	0.94
Cytoplasmic	363	418	0.97
Transmembrane Helix	419	439	0.94
Non-Cytoplasmic	440	449	0.80
Transmembrane Helix	450	469	0.94
Cytoplasmic	470	485	0.81
Transmembrane Helix	486	505	0.91
Non-Cytoplasmic	506	520	0.82
Transmembrane Helix	521	543	0.89
Cytoplasmic	544	590	0.98
Transmembrane Helix	591	613	0.91
Non-Cytoplasmic	614	618	0.86
Transmembrane Helix	619	641	0.91
Cytoplasmic	642	765	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKYGGDVL AGPGGGGGLG PVDVPSARLT KYIVLLCFTK FLKAVGLFES YDLLKAVHIV  60
   61 QFIFILKLGT AFFMVLFQKP FSSGKTITKH QWIKIFKHAV AGCIISLLWF FGLTLCGPLR 120
  121 TLLLFEHSDI VVISLLSVLF TSSGGGPAKT RGAAFFIIAV ICLLLFDNDD LMAKMAEHPE 180
  181 GHHDSALTHM LYTAIAFLGV ADHKGGVLLL VLALCCKVGF HTASRKLSVD VGGAKRLQAL 240
  241 SHLVSVLLLC PWVIVLSVTT ESKVESWFSL IMPFATVIFF VMILDFYVDS ICSVKMEVSK 300
  301 CARYGSFPIF ISALLFGNFW THPITDQLRA MNKAAHQEST EHVLSGGVVV SAIFFILSAN 360
  361 ILSSPSKRGQ KGTLIGYSPE GTPLYNFMGD AFQHSSQSIP RFIKESLKQI LEESDSRQIF 420
  421 YFLCLNLLFT FVELFYGVLT NSLGLISDGF HMLFDCSALV MGLFAALMSR WKATRIFSYG 480
  481 YGRIEILSGF INGLFLIVIA FFVFMESVAR LIDPPELDTH MLTPVSVGGL IVNLIGICAF 540
  541 SHAHSHAHGA SQGSCHSSDH SHSHHMHGHS DHGHGHSHGS AGGGMNANMR GVFLHVLADT 600
  601 LGSIGVIVST VLIEQFGWFI ADPLCSLFIA ILIFLSVVPL IKDACQVLLL RLPPEYEKEL 660
  661 HIALEKIQKI EGLISYRDPH FWRHSASIVA GTIHIQVTSD VLEQRIVQQV TGILKDAGVN 720
  721 NLTIQVEKEA YFQHMSGLST GFHDVLAMTK QMESMKYCKD GTYIM