YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.40
Transmembrane Helix	18	40	0.68
Cytoplasmic	41	52	0.50
Transmembrane Helix	53	74	0.71
Non-Cytoplasmic	75	77	0.58
Transmembrane Helix	78	98	0.75
Cytoplasmic	99	125	0.90
Transmembrane Helix	126	149	0.87
Non-Cytoplasmic	150	160	0.83
Transmembrane Helix	161	184	0.80
Cytoplasmic	185	199	0.88
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	232	0.89
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	352	0.56
Transmembrane Helix	353	377	0.83
Non-Cytoplasmic	378	392	0.59
Transmembrane Helix	393	411	0.80
Cytoplasmic	412	434	0.65
Transmembrane Helix	435	454	0.79
Non-Cytoplasmic	455	462	0.71
Transmembrane Helix	463	482	0.95
Cytoplasmic	483	490	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLKQRKED FVTGLNGGSI TEINAVTSIA LVTYISWNLL KNSNLMPPGI SSVQYIIDFA  60
   61 LNWVALLLSI TIYASEPYLL NTLILLPCLL AFIYGKFTSS SKPSNPIYNK KKMITQRFQL 120
  121 EKKPYITAYR GGMLILTAIA ILAVDFPIFP RRFAKVETWG TSLMDLGVGS FVFSNGIVSS 180
  181 RALLKNLSLK SKPSFLKNAF NALKSGGTLL FLGLLRLFFV KNLEYQEHVT EYGVHWNFFI 240
  241 TLSLLPLVLT FIDPVTRMVP RCSIAIFISC IYEWLLLKDD RTLNFLILAD RNCFFSANRE 300
  301 GIFSFLGYCS IFLWGQNTGF YLLGNKPTLN NLYKPSTQDV VAASKKSSTW DYWTSVTPLS 360
  361 GLCIWSTIFL VISQLVFQYH PYSVSRRFAN LPYTLWVITY NLLFLTGYCL TDKIFGNSSE 420
  421 YYKVAECLES INSNGLFLFL LANVSTGLVN MSMVTIDSSP LKSFLVLLAY CSFIAVISVF 480
  481 LYRKRIFIKL