YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAM3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	101	0.91
Non-Cytoplasmic	102	107	0.67
Transmembrane Helix	108	129	0.87
Cytoplasmic	130	156	0.80
Transmembrane Helix	157	181	0.70
Non-Cytoplasmic	182	189	0.80
Transmembrane Helix	190	208	0.96
Cytoplasmic	209	219	0.74
Transmembrane Helix	220	240	0.93
Non-Cytoplasmic	241	266	0.86
Transmembrane Helix	267	287	0.90
Cytoplasmic	288	303	0.92
Transmembrane Helix	304	325	0.92
Non-Cytoplasmic	326	360	0.94
Transmembrane Helix	361	382	0.87
Cytoplasmic	383	406	0.88
Transmembrane Helix	407	425	0.97
Non-Cytoplasmic	426	432	0.85
Transmembrane Helix	433	456	0.88
Cytoplasmic	457	476	0.87
Transmembrane Helix	477	496	0.94
Non-Cytoplasmic	497	512	0.86
Transmembrane Helix	513	534	0.91
Cytoplasmic	535	587	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILKRGNES DKFTKIETES TTIPNDSDRS GSLIRRMKDS FKQSNLHVIP EDLENSEQTE  60
   61 QEKIQWKLAS QPYQKVLSQR HLTMIAIGGT LGTGLFIGLG YSLASGPAAL LIGFLLVGTS 120
  121 MFCVVQSAAE LSCQFPVSGS YATHVSRFID ESVGFTVATN YALAWLISFP SELIGCALTI 180
  181 SYWNQTVNPA VWVAIFYVFI MVLNLFGVRG FAETEFALSI IKVIAIFIFI IIGIVLIAGG 240
  241 GPNSTGYIGA KYWHDPGAFA KPVFKNLCNT FVSAAFSFGG SELVLLTSTE SKNISAISRA 300
  301 AKGTFWRIAI FYITTVVIIG CLVPYNDPRL LSGSNSEDVS ASPFVIALSN TGSMGAKVSN 360
  361 FMNVVILVAV VSVCNSCVYA SSRLIQALGA SGQLPSVCSY MDRKGRPLVG IGISGAFGLL 420
  421 GFLVASKKED EVFTWLFALC SISSFFTWFC ICMSQIRFRM ALKAQGRSND EIAYKSILGV 480
  481 YGGILGCVLN ALLIAGEIYV SAAPVGSPSS AEAFFEYCLS IPIMIVVYFA HRFYRRDWKH 540
  541 FYIKRSEIDL DTGCSVENLE LFKAQKEAEE QLIASKPFYY KIYRFWC