YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLC1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	163	0.99
Transmembrane Helix	164	187	0.88
Cytoplasmic	188	195	0.78
Transmembrane Helix	196	217	0.80
Non-Cytoplasmic	218	223	0.73
Transmembrane Helix	224	243	0.77
Cytoplasmic	244	249	0.74
Transmembrane Helix	250	271	0.57
Non-Cytoplasmic	272	316	0.62
Transmembrane Helix	317	344	0.75
Cytoplasmic	345	371	0.70
Transmembrane Helix	372	390	0.85
Non-Cytoplasmic	391	397	0.72
Transmembrane Helix	398	420	0.92
Cytoplasmic	421	461	0.87
Transmembrane Helix	462	482	0.91
Non-Cytoplasmic	483	489	0.65
Transmembrane Helix	490	507	0.93
Cytoplasmic	508	516	0.74
Transmembrane Helix	517	537	0.94
Non-Cytoplasmic	538	553	0.73
Transmembrane Helix	554	578	0.89
Cytoplasmic	579	793	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLVTLWCL ICTCLVLPVA AKKRTLTASS LVTCMENSQL SANSFDVSFS PDDRSLHYDL  60
   61 DMTTQIDSYI YAYVDVYAYG FKIITENFDV CSMGWKQFCP VHPGNIQIDS IEYIAQKYVK 120
  121 MIPGIAYQVP DIDAYVRLNI YNNVSENLAC IQVFFSNGKT VSQIGVKWVT AVIAGIGLLT 180
  181 SAVLSTFGNS TAASHISANT MSLFLYFQSV AVVAMQHVDS VPPIAAAWSE NLAWSMGLIR 240
  241 ITFMQKIFRW YVEATGGSAS LYLTATTMSV LTQRGLDYLK NTSVYKRAEN VLYGNSNTLI 300
  301 FRGIKRMGYR MKIENTAIVC TGFTFFVLCG YFLAGFIMAC KYSIELCIRC GWMRSDRFYQ 360
  361 FRKNWRSVLK GSLLRYIYIG FTQLTILSFW EFTERDSAGV IVIACLFIVL SCGLMAWAAY 420
  421 RTIFFASKSV EMYNNPAALL YGDEYVLNKY GFFYTMFNAK HYWWNALLTT YILVKALFVG 480
  481 FAQASGKTQA LAIFIIDLAY FVAIIRYKPY LDRPTNIVNI FICTVTLVNS FLFMFFSNLF 540
  541 NQKYAVSAIM GWVFFIMNAA FSLLLLLMIL AFTTIILFSK NPDSRFKPAK DDRASFQKHA 600
  601 IPHEGALNKS VANELMALGN VAKDHTENWE YELKSQEGKS EDNLFGVEYD DEKTGTNSEN 660
  661 AESSSKETTR PTFSEKVLRS LSIKRNKSKL GSFKRSAPDK ITQQEVSPDR ASSSPNSKSY 720
  721 PGVSHTRQES EANNGLINAY EDEQFSLMEP SILEDAASST QMHAMPARDL SLSSVANAQD 780
  781 VTKKANILDP DYL