YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSPWKRLL WLKQEYPDNY TDPSFIELRA RQKAESNQKS DRKLSEAARA QIRLDFISFY  60
   61 QTILNTSFIY ITFTYIYYYG FDPIPPTIFL SFITLIISRT KVDPLLSSFM DVKSSLIITF 120
  121 AMLTLSPVLK SLSKTTASDS IWTLSFWLTL WYIFVISSTK SKDKPSNLST NILVALVAVL 180
  181 SSRLSTTIDV FCFLLICIQL NIILPTYLSV TNKVVPIISN IIVYSFLNVA LGWIYMLLIF 240
  241 FASVFYITVL PKWFIYWKIN YHKRDNDLLS TWDARTPILD

Type	Start	End	Confidence
Cytoplasmic	1	55	0.95
Transmembrane Helix	56	77	0.85
Non-Cytoplasmic	78	83	0.64
Transmembrane Helix	84	102	0.79
Cytoplasmic	103	108	0.82
Transmembrane Helix	109	129	0.82
Non-Cytoplasmic	130	139	0.62
Transmembrane Helix	140	158	0.89
Cytoplasmic	159	178	0.72
Transmembrane Helix	179	208	0.68
Non-Cytoplasmic	209	228	0.76
Transmembrane Helix	229	250	0.88
Cytoplasmic	251	280	0.80