YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUT4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	114	0.93
Transmembrane Helix	115	136	0.90
Non-Cytoplasmic	137	143	0.67
Transmembrane Helix	144	168	0.82
Cytoplasmic	169	199	0.82
Transmembrane Helix	200	219	0.86
Non-Cytoplasmic	220	228	0.68
Transmembrane Helix	229	247	0.95
Cytoplasmic	248	256	0.71
Transmembrane Helix	257	279	0.90
Non-Cytoplasmic	280	311	0.73
Transmembrane Helix	312	331	0.66
Cytoplasmic	332	350	0.91
Transmembrane Helix	351	372	0.93
Non-Cytoplasmic	373	406	0.94
Transmembrane Helix	407	427	0.87
Cytoplasmic	428	450	0.86
Transmembrane Helix	451	472	0.93
Non-Cytoplasmic	473	482	0.85
Transmembrane Helix	483	505	0.89
Cytoplasmic	506	526	0.93
Transmembrane Helix	527	549	0.93
Non-Cytoplasmic	550	557	0.79
Transmembrane Helix	558	575	0.97
Cytoplasmic	576	627	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNILPFHKN NRHSAGVVTC ADDVSGDGSG GDTKKEEDVV QVTESPSSGS RNNHRSDNEK  60
   61 DDAIRMEKIS KNQSASSNGT IREDLIMDVD LEKSPSVDGD SEPHKLKQGL QSRHVQLIAL 120
  121 GGAIGTGLLV GTSSTLHTCG PAGLFISYII ISAVIYPIMC ALGEMVCFLP GDGSDSAGST 180
  181 ANLVTRYVDP SLGFATGWNY FYCYVILVAA ECTAASGVVE YWTTAVPKGV WITIFLCVVV 240
  241 ILNFSAVKVY GESEFWFASI KILCIVGLII LSFILFWGGG PNHDRLGFRY WQHPGAFAHH 300
  301 LTGGSLGNFT DIYTGIIKGA FAFILGPELV CMTSAECADQ RRNIAKASRR FVWRLIFFYV 360
  361 LGTLAISVIV PYNDPTLVNA LAQGKPGAGS SPFVIGIQNA GIKVLPHIIN GCILTSAWSA 420
  421 ANAFMFASTR SLLTMAQTGQ APKCLGRINK WGVPYVAVGV SFLCSCLAYL NVSSSTADVF 480
  481 NWFSNISTIS GFLGWMCGCI AYLRFRKAIF YNGLYDRLPF KTWGQPYTVW FSLIVIGIIT 540
  541 ITNGYAIFIP KYWRVADFIA AYITLPIFLV LWFGHKLYTR TWRQWWLPVS EIDVTTGLVE 600
  601 IEEKSREIEE MRLPPTGFKD KFLDALL