YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGSKQVKI ISLLLLDTVF FGIEITTGYL SHSLALIADS FHMLNDIISL VVALWAVNVA  60
   61 KNRNPDSTYT YGWKRAEILG ALINAVFLIA LCVSILIEAL QRIIAPPVIE NPKFVLYVGV 120
  121 AGLISNTVGL FLFHDNDQEH GHGHGHSHGG IFADHEMHMP SSHTHTHAHV DGIENTTPMD 180
  181 STDNISEIMP NAIVDSFMNE NTRLLTPENA SKTPSYSTSS HTIASGGNYT EHNKRKRSLN 240
  241 MHGVFLHVLG DALGNIGVML SAFFIWKTDY SWKYYTDPLV SLIITGIIFS SALPLSCKAS 300
  301 KILLQATPST LSGDQVEGDL LKIPGIIAIH DFHIWNLTES IFIASLHIQL DISPEQFTDL 360
  361 AKIVRSKLHR YGIHSATLQP EFITREVTST ERAGDSQGDH LQNDPLSLRP KTYGTGISGS 420
  421 TCLIDDAANC NTADCLEDH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	40	0.67
Transmembrane Helix	41	59	0.92
Cytoplasmic	60	77	0.91
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	113	0.85
Transmembrane Helix	114	134	0.93
Cytoplasmic	135	243	0.98
Transmembrane Helix	244	266	0.95
Non-Cytoplasmic	267	274	0.91
Transmembrane Helix	275	297	0.85
Cytoplasmic	298	439	0.91