YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCH5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.99
Transmembrane Helix	106	127	0.91
Non-Cytoplasmic	128	145	0.89
Transmembrane Helix	146	167	0.92
Cytoplasmic	168	173	0.79
Transmembrane Helix	174	193	0.92
Non-Cytoplasmic	194	200	0.76
Transmembrane Helix	201	223	0.92
Cytoplasmic	224	233	0.84
Transmembrane Helix	234	254	0.94
Non-Cytoplasmic	255	270	0.85
Transmembrane Helix	271	292	0.92
Cytoplasmic	293	331	0.95
Transmembrane Helix	332	353	0.84
Non-Cytoplasmic	354	366	0.73
Transmembrane Helix	367	384	0.92
Cytoplasmic	385	394	0.79
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	423	0.86
Transmembrane Helix	424	446	0.90
Cytoplasmic	447	459	0.86
Transmembrane Helix	460	482	0.92
Non-Cytoplasmic	483	489	0.88
Transmembrane Helix	490	514	0.87
Cytoplasmic	515	521	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSLTPKD TIVPEEQTNQ LRQPDLDEDS IHYDPEADDL ESLETTASYA STSVSAKVYT  60
   61 KKEVNKGTDI ESQPHWGENT SSTHDSDKEE DSNEEIESFP EGGFKAWVVT FGCFLGLIAC 120
  121 FGLLNSTGVI ESHLQDNQLS SESVSTIGWL FSLFLFVCSA SCIISGTYFD RNGFRTIMIV 180
  181 GTVFHVAGLF ATANSTKYWH FILSFAIVCG FGNGIVLSPL VSVPAHYFFK RRGTALAMAT 240
  241 IGGSVGGVVF PIMLRSFFSM KSDTDPTYGF VWGIRTLGFL DLALLTLSII LVKERLPHVI 300
  301 ENSKDGESRW RYILRVYILQ CFDAKAFLDM KYLFCVLGTV FSELSINSAL TYYGSYATSH 360
  361 GISANDAYTL IMIINVCGIP GRWVPGYLSD KFGRFNVAIA TLLTLFIVMF VGWLPFGTNL 420
  421 TNMYVISALY GFCSGSVFSL LPVCCGQISK TEEFGKRYST MYFVVGFGTL VGIPITGAII 480
  481 SIKTTADYQH YIIFSGLATF VSAVCYIISR AYCVGFKWVR F