YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRC1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDTSLSES SLLKEESGSL TKSRPPIKSN PVRENIKSFV AGGVGGVCAV FTGHPFDLIK  60
   61 VRCQNGQANS TVHAITNIIK EAKTQVKGTL FTNSVKGFYK GVIPPLLGVT PIFAVSFWGY 120
  121 DVGKKLVTFN NKQGGSNELT MGQMAAAGFI SAIPTTLVTA PTERVKVVLQ TSSKGSFIQA 180
  181 AKTIVKEGGI ASLFKGSLAT LARDGPGSAL YFASYEISKN YLNSRQPRQD AGKDEPVNIL 240
  241 NVCLAGGIAG MSMWLAVFPI DTIKTKLQAS STRQNMLSAT KEIYLQRGGI KGFFPGLGPA 300
  301 LLRSFPANAA TFLGVEMTHS LFKKYGI

Type	Start	End	Confidence
Cytoplasmic	1	97	0.71
Transmembrane Helix	98	120	0.69
Non-Cytoplasmic	121	138	0.68
Transmembrane Helix	139	160	0.60
Cytoplasmic	161	236	0.74
Transmembrane Helix	237	258	0.75
Non-Cytoplasmic	259	327	0.62