YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RSB1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPNLRFNIT MIVIWGILLT IHVVQLLMRQ YWFSIAFICT GILEVLGFIG RTWSHSNVAD  60
   61 MDAFLLNMIC LTIAPVFTMG GIYYQLAKLI EVYGHRFSLL PSPMAYSFIF ICSDIVSLVV 120
  121 QAVGGGLCGV AVTDGTSTTT GNHVFIAGLA IQVASMAIFL MLWFHFLFRI YISVRWEHIN 180
  181 SRPISLSLLK ISQTEVDYLY REKFHFLRLE PKRWVFHYFN LAITVAVLTI FTRCCYRLAE 240
  241 LVVGWDGYLI THEWYFIILD ALMMAIATVT LTIFHPGFAF KGRSTSIPIT PGHVDPETLP 300
  301 HTDDVEDILD TSDSKQFDIE KEEFQASMKY PISTFKQFMS KIANLFSSKK KAKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	26	0.90
Cytoplasmic	27	30	0.70
Transmembrane Helix	31	53	0.83
Non-Cytoplasmic	54	62	0.77
Transmembrane Helix	63	86	0.91
Cytoplasmic	87	103	0.78
Transmembrane Helix	104	125	0.85
Non-Cytoplasmic	126	143	0.76
Transmembrane Helix	144	167	0.90
Cytoplasmic	168	213	0.94
Transmembrane Helix	214	236	0.90
Non-Cytoplasmic	237	255	0.86
Transmembrane Helix	256	278	0.90
Cytoplasmic	279	354	0.96