YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYC2
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSENSLNPS EKYNFEECNV LKEPFKNRKE ETKKRKSSML WKNYVLSSSR ITRRLHKSPR  60
   61 KSSFSKNFFI TGCLLTVGAV SSYLTYRYTS ERENKHELSP SYFVKYKISH KRDIDSSHFL 120
  121 LEVTPLFKQK VNIWSLMTAE NLWSVEIKQP EVMVVRNYTP LPLKFNPASK EIEILKDGDN 180
  181 ADGKLSFYIK KYENGEVARW LHHLPKGHII EIRGPFIDYE FPHLPNELKR SRDCLYMDNR 240
  241 NERGNNVREN SQFIYQPYDI MMFTAGTGIV TALQLLLTES PFRGTIKLFH TDKNIKQLGP 300
  301 LYPILLRLQA SNRVQLKIFE TDRQTKQDVL KSIQKSITKP YPYKGLLPFS NVNNKNIMPV 360
  361 LALVCGPESY ISSISGRKYD LNQGPVGGLL SKEGWNSDNV YKLS

Type	Start	End	Confidence
Cytoplasmic	1	63	0.83
Transmembrane Helix	64	86	0.75
Non-Cytoplasmic	87	404	0.87