YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AUS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	387	0.81
Transmembrane Helix	388	408	0.90
Cytoplasmic	409	420	0.60
Transmembrane Helix	421	442	0.83
Non-Cytoplasmic	443	467	0.79
Transmembrane Helix	468	490	0.89
Cytoplasmic	491	498	0.73
Transmembrane Helix	499	521	0.92
Non-Cytoplasmic	522	528	0.59
Transmembrane Helix	529	550	0.91
Cytoplasmic	551	556	0.70
Transmembrane Helix	557	575	0.69
Non-Cytoplasmic	576	638	0.86
Transmembrane Helix	639	658	0.93
Cytoplasmic	659	1081	0.89
Transmembrane Helix	1082	1103	0.81
Non-Cytoplasmic	1104	1109	0.73
Transmembrane Helix	1110	1129	0.81
Cytoplasmic	1130	1162	0.70
Transmembrane Helix	1163	1186	0.76
Non-Cytoplasmic	1187	1195	0.57
Transmembrane Helix	1196	1216	0.91
Cytoplasmic	1217	1223	0.69
Transmembrane Helix	1224	1247	0.88
Non-Cytoplasmic	1248	1346	0.82
Transmembrane Helix	1347	1369	0.89
Cytoplasmic	1370	1394	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISKYFTPV ADGSLTFNGA NIQFGADAQG ESKKSYDAED SMPNPANQLN DITFQAEAGE  60
   61 MVLVLGYPTS TLFKTLFHGK TSLSYSPPGS IKFKNNEFKS FSEKCPHQII YNNEQDVHFP 120
  121 FLTVEQTIDF ALSCKFDIPK GERDQIRNEL LREFGLSHVL KTIVGNDFFR GVSGGERKRI 180
  181 SIIETFIANG SVYLWDNSTK GLDSATALDF LEILRKMAKA TRSVNLVRIS QASDKIVDKF 240
  241 DKILMLSDSY QLFYGTVDEC LTYFRDTLGI EKDPNDCIIE YLTSILNFQF KNKNLGNLSN 300
  301 SSSASVLKTA TGEVTKYTYN SDFDLYDQWK HSSYYRNIKQ QIQGSSIDDS IKEVDPSDVS 360
  361 PIFNIPLKKQ LLFCTKRAFQ RSLGDKAYMT AQFISVVIQS LVIGSLFYEI PLTTIGSYSR 420
  421 GSLTFFSILF FTFLSLADMP IAFQRQPVVK KQSQLHFYTN WVETLSTTVF DYCFKLCLVI 480
  481 VFSIILYFLA HLQYKAARFF IFLLFLSFYN FCMVSLFALT TLVAPTISVA NLFAGILLLA 540
  541 IAMYASYVIY LKNMHPWFVW IAYLNPAMYA MEAILSNELY NLKLDCSETI VPRGPTYNDV 600
  601 PFSHKACAWQ GATLGNDYVR GRDYLKQGLS YTYHHVWRNF GIIIGFLVFF IACTLFASQY 660
  661 IKPYFNKDEI ERNNSRLTRW LPFLNKKRGT RSSARNDSKY VGIPKSHSVS SSSSSLSAVP 720
  721 YQISPSNKEM ALNDYNEQPI TETVETQKHI ISWKNINYTV GTKKLINNAS GFISSGLTAL 780
  781 MGESGAGKTT LLNVLSQRVE TGVVSGEILI DGHPLTDEDA FKRSIGFVQQ QDLHLDLLSV 840
  841 KESLEISCLL RGDGDRAYLD TVSNLLKLPS DILVADLNPT QRKLLSIGVE LVTKPSLLLF 900
  901 LDEPTSGLDA EAALTIVKFL KQLSLQGQAI FCTIHQPSKS VISHFDNIFL LKRGGECVFF 960
  961 GPMDDACGYF MSHDNTLVYD KEHDNPADFV IDAVGNSNSS AGKDTAEEAL TLNKEAIDWS1020
 1021 ALWESSVEKK LVKKETARLE DDARASGVDY TTSLWKQPSY LQQLALITRR QYICTKRDMT1080
 1081 YVMAKYCLNG GAGLFIGFSF WHIKHNIIGL QDSIFFCFMA LCVSSPLINQ IQDKALKTKE1140
 1141 VYVAREARSN TYHWTVLLLS QSIIELPLAL TSSTLFFVCA FFSCGFNNAG WSAGVFFLNY1200
 1201 MLFAAYYSTL GLWLIYTAPN LQTAAVFVAF IYSFTASFCG VMQPYSLFPT FWKFMYRVSP1260
 1261 YTYFVETFVS ILLHNWEIKC DMSEMVPGQP LTGQSCGQFM EAFIEEYGGY LHNKNTFTVC1320
 1321 AYCTYTVGDD FLKNENMSYD HVWRNFGIEW AFVGFNFFAM FAGYYLTYVA RIWPKVFKII1380
 1381 TKVIPHRGKK PVQN