YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.90
Transmembrane Helix	40	58	0.90
Non-Cytoplasmic	59	102	0.89
Transmembrane Helix	103	125	0.87
Cytoplasmic	126	143	0.83
Transmembrane Helix	144	164	0.78
Non-Cytoplasmic	165	177	0.67
Transmembrane Helix	178	197	0.56
Cytoplasmic	198	217	0.40
Transmembrane Helix	218	242	0.76
Non-Cytoplasmic	243	261	0.55
Transmembrane Helix	262	284	0.89
Cytoplasmic	285	330	0.71
Transmembrane Helix	331	352	0.90
Non-Cytoplasmic	353	357	0.68
Transmembrane Helix	358	377	0.94
Cytoplasmic	378	397	0.58
Transmembrane Helix	398	416	0.76
Non-Cytoplasmic	417	424	0.70
Transmembrane Helix	425	445	0.82
Cytoplasmic	446	476	0.86
Transmembrane Helix	477	496	0.93
Non-Cytoplasmic	497	508	0.90
Transmembrane Helix	509	530	0.94
Cytoplasmic	531	544	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIGKRLLVN KPAEESFYAS PMYDFLYPFR PVGNQWLPEY IIFVCAVILR CTIGLGPYSG  60
   61 KGSPPLYGDF EAQRHWMEIT QHLPLSKWYW YDLQYWGLDY PPLTAFHSYL LGLIGSFFNP 120
  121 SWFALEKSRG FESPDNGLKT YMRSTVIISD ILFYFPAVIY FTKWLGRYRN QSPIGQSIAA 180
  181 SAILFQPSLM LIDHGHFQYN SVMLGLTAYA INNLLDEYYA MAAVCFVLSI CFKQMALYYA 240
  241 PIFFAYLLSR SLLFPKFNIA RLTVIAFATL ATFAIIFAPL YFLGGGLKNI HQCIHRIFPF 300
  301 ARGIFEDKVA NFWCVTNVFV KYKERFTIQQ LQLYSLIATV IGFLPAMIMT LLHPKKHLLP 360
  361 YVLIACSMSF FLFSFQVHEK TILIPLLPIT LLYSSTDWNV LSLVSWINNV ALFTLWPLLK 420
  421 KDGLHLQYAV SFLLSNWLIG NFSFITPRFL PKSLTPGPSI SSINSDYRRR SLLPYNVVWK 480
  481 SFIIGTYIAM GFYHFLDQFV APPSKYPDLW VLLNCAVGFI CFSIFWLWSY YKIFTSGSKS 540
  541 MKDL